libraries and modules info information file for loading the metabolic…

… network
josura · Oct 16, 2024 · 828edd6 · 828edd6
1 parent 7597671
commit 828edd6
Showing 1 changed file with 21 additions and 0 deletions.
diff --git a/scripts/R/temporalSingleCell/create_input_fluxes_teesside.Rmd b/scripts/R/temporalSingleCell/create_input_fluxes_teesside.Rmd
@@ -0,0 +1,21 @@
+---
+title: "creating inputs for fluxes"
+---
+
+```{r}
+library(CellChat)
+library(Seurat)
+library(readr)
+library(Matrix)
+#library for transpose function
+library(data.table)
+```
+
+```{r}
+# information about the graph that will be built from the metabolic network
+moduleInfoLocation <- "/home/josura/Projects/ccc/fluxes/scFEA/data/scFEA.M171.mouse.moduleinfo.csv"
+incidenceMatrixLocation <- "/home/josura/Projects/ccc/fluxes/scFEA/data/cmMat_complete_mouse_c70_m168.csv"
+moduleToGeneInfluence <- "/home/josura/Projects/ccc/fluxes/scFEA/data/module_gene_m168.csv"
+# fluxes file generated from scFEA
+        
+```