added method to get graphs in folder

josura · Aug 5, 2023 · fee5f03 · fee5f03
1 parent 1d50e6c
commit fee5f03
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Showing 2 changed files with 15 additions and 0 deletions.
diff --git a/src/utilities.cxx b/src/utilities.cxx
@@ -270,6 +270,20 @@ std::pair<std::vector<std::string>,std::vector<std::tuple<std::string,std::strin
     return std::pair<std::vector<std::string>,std::vector<std::tuple<std::string,std::string,double>>> (nameRet,ret);
 }
 
+std::pair<std::vector<std::string>,std::vector<std::pair<std::vector<std::string>,std::vector<std::tuple<std::string,std::string,double>>>>> edgesFileToEdgesListAndNodesByNameFromFolder(std::string filename){
+    std::vector<std::pair<std::vector<std::string>,std::vector<std::tuple<std::string,std::string,double>>>> ret;
+    std::vector<std::string> graphNames;
+    std::vector<std::string> files = get_all(filename,".tsv");
+    for(auto iter = files.cbegin(); iter!=files.cend();iter++){
+        std::pair<std::vector<std::string>,std::vector<std::tuple<std::string,std::string,double>>> edgesListAndNodesByName = edgesFileToEdgesListAndNodesByName(*iter);
+        std::vector<std::string> splitted = splitString(*iter, "/"); //split the path
+        std::string filename = splitted[splitted.size()-1]; //last element
+        std::vector<std::string> splittedFilename = splitString(filename, "."); //split the extension
+        graphNames.push_back(splittedFilename[0]);
+        ret.push_back(edgesListAndNodesByName);
+    }
+    return std::pair<std::vector<std::string>,std::vector<std::pair<std::vector<std::string>,std::vector<std::tuple<std::string,std::string,double>>>>>(graphNames,ret);
+}
 
 std::vector<std::string> getTypesFromFolderFileNames(std::string folderPath){
     std::vector<std::string> ret;

diff --git a/src/utilities.h b/src/utilities.h
@@ -129,6 +129,7 @@ std::vector<std::string> splitString(std::string toSplit , std::string delimiter
 
 std::pair<std::vector<int>,std::vector<std::tuple<int,int,double>>> edgesFileToEdgesListByIndex(std::string filename);
 std::pair<std::vector<std::string>,std::vector<std::tuple<std::string,std::string,double>>> edgesFileToEdgesListAndNodesByName(std::string filename);
+std::pair<std::vector<std::string>,std::vector<std::pair<std::vector<std::string>,std::vector<std::tuple<std::string,std::string,double>>>>> edgesFileToEdgesListAndNodesByNameFromFolder(std::string filename);
 std::tuple<std::vector<std::string>,std::vector<std::string>,std::vector<std::vector<double>>> logFoldChangeMatrixToCellVectors(std::string filename, const std::vector<std::string>& finalNames,bool useEntrez=false);
 std::tuple<std::vector<std::string>,std::vector<std::string>,std::vector<std::vector<double>>> logFoldChangeMatrixToCellVectors(std::string filename, const std::vector<std::string>& finalNames,std::vector<std::string> subTypes= std::vector<std::string>(), bool useEntrez=false);
 std::map<std::string,std::vector<std::tuple<std::string,std::string,double>>> cellInteractionFileToEdgesListAndNodesByName(std::string filename,bool useEntrez=false);