updated performance

jrenaud90 · May 23, 2024 · fad336d · fad336d
1 parent 668e9ec
commit fad336d
Show file tree

Hide file tree

Showing 13 changed files with 32 additions and 31 deletions.
diff --git a/Benchmarks/CyRK - SciPy Comparison.ipynb b/Benchmarks/CyRK - SciPy Comparison.ipynb
diff --git a/Benchmarks/CyRK_CySolver.pdf b/Benchmarks/CyRK_CySolver.pdf
diff --git a/Benchmarks/CyRK_SciPy_Compare_predprey_v0-9-0.png b/Benchmarks/CyRK_SciPy_Compare_predprey_v0-9-0.png
diff --git a/Benchmarks/CyRK_SciPy_Compare_predprey_v0-9-0a0-dev1.png b/Benchmarks/CyRK_SciPy_Compare_predprey_v0-9-0a0-dev1.png
diff --git a/Benchmarks/CyRK_cyrk_ode.pdf b/Benchmarks/CyRK_cyrk_ode.pdf
diff --git a/Benchmarks/CyRK_numba.pdf b/Benchmarks/CyRK_numba.pdf
diff --git a/Benchmarks/SciPy.pdf b/Benchmarks/SciPy.pdf
diff --git a/...ks/CyRK_SciPy_Compare_predprey_v0-8-4.png → ...ve/CyRK_SciPy_Compare_predprey_v0-8-4.png b/...ks/CyRK_SciPy_Compare_predprey_v0-8-4.png → ...ve/CyRK_SciPy_Compare_predprey_v0-8-4.png
diff --git a/...ks/CyRK_SciPy_Compare_predprey_v0-8-6.png → ...ve/CyRK_SciPy_Compare_predprey_v0-8-6.png b/...ks/CyRK_SciPy_Compare_predprey_v0-8-6.png → ...ve/CyRK_SciPy_Compare_predprey_v0-8-6.png
diff --git a/CHANGES.md b/CHANGES.md
@@ -11,6 +11,7 @@ Major Changes:
 
 Other Changes:
 - CI will now build x64-86 and arm64 wheels for MacOS (change suggested by @dihm in [#49](https://github.com/jrenaud90/CyRK/issues/49)).
+  - Did have to use this `nomkl` [workaround](https://stackoverflow.com/questions/53014306/error-15-initializing-libiomp5-dylib-but-found-libiomp5-dylib-already-initial) which may cause problems. TBD.
 
 #### v0.8.7 (2024-02-13)
 

diff --git a/Performance/cyrk_performance-DOP853.csv b/Performance/cyrk_performance-DOP853.csv
@@ -19,4 +19,4 @@ CyRK Version, Run-on Date, cython (avg), cython (std),CySolver (avg),CySolver (s
 0.8.3, 07/10/2023 02:40:03, 0.9727, 0.0033, 0.0587, 0.0014, 0.1625, 0.0006, 9.9439, 0.0246, 0.4990, 0.0070, 2.6214, 0.0527, 0.4393, 0.0008, 0.0400, 0.0006, 0.1034, 0.0063, 4.4720, 0.1096, 0.3114, 0.0025, 1.1428, 0.0021, 1.4298, 0.0046, 0.0987, 0.0009, 0.2440, 0.0019, 21.2338, 0.3276, 1.7444, 0.0077, 4.3900, 0.0738, 1.6848, 0.0280, 0.1039, 0.0003, 0.4644, 0.0006, 25.3711, 0.1346, 2.2809, 0.0329, 7.3621, 0.0222
 0.8.4, 18/10/2023 12:49:04, 0.9453, 0.0036, 0.0574, 0.0012, 0.1718, 0.0070, 9.9086, 0.1287, 0.4833, 0.0013, 1.4208, 0.0060, 0.4293, 0.0016, 0.0383, 0.0001, 0.0956, 0.0006, 4.2518, 0.0123, 0.2944, 0.0001, 0.7605, 0.0005, 1.3829, 0.0014, 0.0931, 0.0001, 0.2438, 0.0003, 19.2126, 0.0622, 1.1729, 0.0003, 3.1186, 0.0861, 1.6221, 0.0111, 0.0957, 0.0000, 0.4634, 0.0006, 22.3320, 0.0879, 1.2067, 0.0012, 6.1291, 0.0053
 0.8.6, 13/02/2024 17:08:45, 0.9814, 0.0156, 0.0611, 0.0001, 0.1640, 0.0017, 10.2798, 0.4311, 0.5307, 0.0079, 1.4800, 0.0021, 0.4434, 0.0036, 0.0420, 0.0005, 0.0991, 0.0000, 4.4219, 0.0575, 0.3169, 0.0014, 0.7947, 0.0034, 1.4053, 0.0155, 0.0973, 0.0004, 0.2517, 0.0009, 19.6548, 0.3540, 1.2133, 0.0019, 3.1887, 0.0088, 1.6764, 0.0156, 0.1001, 0.0001, 0.5250, 0.0036, 23.9277, 0.3592, 1.2488, 0.0017, 7.2941, 0.1608
-0.9.0a0.dev1, 28/04/2024 16:35:40, 1.0821, 0.0759, 0.0542, 0.0005, 0.1718, 0.0085, 10.7475, 0.1318, 0.5200, 0.0034, 1.5308, 0.0297, 0.4628, 0.0038, 0.0338, 0.0001, 0.1002, 0.0012, 4.6868, 0.0765, 0.3107, 0.0036, 0.8255, 0.0217, 1.4887, 0.0342, 0.0911, 0.0010, 0.2890, 0.0163, 21.0884, 0.6085, 1.2186, 0.0099, 3.3427, 0.0986, 1.7910, 0.0446, 0.0930, 0.0006, 0.4984, 0.0052, 24.2231, 0.5540, 1.2622, 0.0102, 6.7969, 0.1273
+0.9.0, 22/05/2024 22:15:26, 0.9568, 0.0401, 0.0505, 0.0005, 0.1598, 0.0029, 9.3965, 0.0572, 0.4906, 0.0023, 1.4464, 0.0674, 0.4580, 0.0164, 0.0339, 0.0003, 0.0993, 0.0012, 4.4166, 0.0646, 0.3087, 0.0043, 0.7972, 0.0071, 1.6945, 0.2623, 0.0890, 0.0012, 0.2536, 0.0004, 19.7165, 0.1345, 1.1869, 0.0065, 3.1730, 0.0257, 1.6580, 0.0074, 0.0912, 0.0001, 0.4899, 0.0083, 22.9837, 0.2493, 1.2295, 0.0061, 6.4824, 0.0413
diff --git a/Performance/cyrk_performance-RK23.csv b/Performance/cyrk_performance-RK23.csv
@@ -19,4 +19,4 @@ CyRK Version, Run-on Date, cython (avg), cython (std),CySolver (avg),CySolver (s
 0.8.3, 07/10/2023 02:37:45, 4.5212, 0.1075, 0.2681, 0.0021, 0.7992, 0.0038, 43.9629, 0.3217, 2.5955, 0.0502, 9.2842, 0.4116, 2.7602, 0.0088, 0.2146, 0.0037, 0.5896, 0.0074, 27.1210, 0.1858, 2.0566, 0.0327, 5.7936, 0.0150, 4.8923, 0.0594, 0.3719, 0.0011, 0.9807, 0.0023, 82.6179, 0.6252, 6.0628, 0.0336, 20.2684, 0.2082, 5.6639, 0.0115, 0.9587, 0.2834, 1525.4251, 2635.4115, 105.9372, 0.3232, 14.0169, 0.0614, 45.0599, 0.8249
 0.8.4, 18/10/2023 12:46:46, 4.4202, 0.0673, 0.2500, 0.0004, 0.8115, 0.0034, 43.1191, 0.0775, 2.4081, 0.0282, 10.0251, 0.7074, 2.7552, 0.0436, 0.2110, 0.0039, 0.5987, 0.0058, 26.5597, 0.2133, 1.9887, 0.0201, 5.8675, 0.1112, 4.7007, 0.0078, 0.3080, 0.0014, 0.9944, 0.0238, 81.1241, 0.3424, 5.5864, 0.7125, 19.9567, 0.1538, 5.4119, 0.0106, 0.3208, 0.0010, 1322.6941, 2287.9898, 96.8733, 2.3521, 5.5968, 0.1162, 36.6713, 0.3267
 0.8.6, 13/02/2024 17:06:17, 4.5290, 0.0708, 0.2875, 0.0033, 0.9640, 0.1354, 43.6531, 0.0926, 2.8374, 0.0722, 8.9517, 0.2453, 2.7551, 0.0064, 0.2243, 0.0006, 0.6140, 0.0013, 27.0492, 0.2018, 2.1363, 0.0025, 5.9659, 0.0384, 4.6135, 0.0079, 0.3487, 0.0003, 0.9485, 0.0007, 79.4872, 0.4035, 5.9439, 0.1090, 19.9015, 0.1388, 5.6296, 0.0271, 0.3621, 0.0012, 1454.8195, 2516.6233, 96.8326, 0.5951, 6.1248, 0.0257, 38.7549, 0.4298
-0.9.0a0.dev1, 28/04/2024 16:33:18, 4.7953, 0.1380, 0.2774, 0.0022, 0.9154, 0.0921, 48.2304, 2.3404, 2.7864, 0.0900, 9.5501, 0.0960, 2.9073, 0.0365, 0.2226, 0.0090, 0.6248, 0.0041, 29.2903, 0.3552, 2.1533, 0.0246, 7.5314, 1.7160, 4.9601, 0.0650, 0.3488, 0.0068, 1.3128, 0.4091, 84.7193, 0.6367, 6.0557, 0.2830, 22.2041, 0.4342, 6.0133, 0.2861, 0.3729, 0.0200, 1454.6659, 2515.9971, 101.1687, 1.5611, 6.3772, 0.0996, 39.6568, 0.8971
+0.9.0, 22/05/2024 22:13:06, 4.4185, 0.0173, 0.2704, 0.0010, 0.8239, 0.0039, 44.0850, 0.4116, 2.6680, 0.0093, 9.1672, 0.2094, 2.7680, 0.0083, 0.2131, 0.0008, 0.6048, 0.0029, 27.4433, 0.1003, 2.0956, 0.0145, 6.7046, 0.1153, 4.6866, 0.0309, 0.3370, 0.0008, 0.9558, 0.0036, 80.4914, 0.3251, 5.7944, 0.0229, 20.3825, 0.1789, 5.5414, 0.0329, 0.3445, 0.0016, 1365.9393, 2362.3685, 98.7604, 2.1827, 6.2220, 0.0443, 38.7668, 0.8054
diff --git a/Performance/cyrk_performance-RK45.csv b/Performance/cyrk_performance-RK45.csv
@@ -19,4 +19,4 @@ CyRK Version, Run-on Date, cython (avg), cython (std),CySolver (avg),CySolver (s
 0.8.3, 07/10/2023 02:39:08, 1.2268, 0.0292, 0.0670, 0.0002, 0.2042, 0.0002, 13.0410, 0.0369, 1.0062, 0.0659, 2.6633, 0.0087, 0.8234, 0.0038, 0.0631, 0.0002, 0.1648, 0.0001, 8.8861, 0.0427, 0.7835, 0.0085, 2.1426, 0.0023, 1.6358, 0.0049, 0.1139, 0.0050, 0.6746, 0.0009, 26.8571, 0.1145, 3.0055, 0.0209, 6.6462, 0.1028, 1.9187, 0.0032, 0.1280, 0.0045, 0.9513, 0.0050, 32.9776, 0.3770, 4.3772, 0.1087, 10.9500, 0.0345
 0.8.4, 18/10/2023 12:48:10, 1.1825, 0.0070, 0.0622, 0.0001, 0.2012, 0.0008, 11.7285, 0.0223, 0.5412, 0.0092, 1.8985, 0.0613, 0.8106, 0.0029, 0.0601, 0.0012, 0.1661, 0.0004, 7.9235, 0.0105, 0.4982, 0.0007, 1.4473, 0.0029, 1.6015, 0.0058, 0.0981, 0.0003, 0.2963, 0.0039, 23.5090, 0.0487, 1.3260, 0.0138, 4.0189, 0.0470, 1.8400, 0.0072, 0.1011, 0.0002, 0.5443, 0.0013, 27.1240, 0.0951, 1.3706, 0.0024, 7.7848, 0.0081
 0.8.6, 13/02/2024 17:07:48, 1.1940, 0.0018, 0.0656, 0.0001, 0.2073, 0.0006, 12.0870, 0.1605, 0.5541, 0.0014, 1.8434, 0.0014, 0.8268, 0.0006, 0.0641, 0.0001, 0.1746, 0.0037, 8.1272, 0.0545, 0.5381, 0.0006, 1.4994, 0.0056, 1.5900, 0.0112, 0.0984, 0.0001, 0.2944, 0.0007, 23.5061, 0.1064, 1.2961, 0.0085, 3.9463, 0.0073, 1.8949, 0.0107, 0.1017, 0.0001, 0.6063, 0.0029, 28.0150, 0.1407, 1.3543, 0.0045, 8.5997, 0.0030
-0.9.0a0.dev1, 28/04/2024 16:34:44, 1.2746, 0.0125, 0.0583, 0.0006, 0.2196, 0.0085, 12.9048, 0.1873, 0.5548, 0.0054, 2.0504, 0.0367, 0.8850, 0.0070, 0.0574, 0.0009, 0.1762, 0.0024, 8.6755, 0.0900, 0.5403, 0.0077, 1.5383, 0.0141, 1.6504, 0.0116, 0.0915, 0.0009, 0.3107, 0.0095, 25.0740, 0.0879, 1.3099, 0.0083, 4.3287, 0.1021, 2.0066, 0.0236, 0.0966, 0.0009, 0.5818, 0.0113, 29.3030, 0.5569, 1.3654, 0.0209, 8.6343, 0.2734
+0.9.0, 22/05/2024 22:14:31, 1.1960, 0.0130, 0.0572, 0.0002, 0.2087, 0.0020, 11.9870, 0.1021, 0.5485, 0.0132, 2.0033, 0.0304, 0.8442, 0.0170, 0.0573, 0.0014, 0.1752, 0.0058, 8.3417, 0.2007, 0.5387, 0.0105, 1.5645, 0.0520, 1.7154, 0.1224, 0.0902, 0.0011, 0.2965, 0.0014, 23.8292, 0.3713, 1.2821, 0.0044, 4.1381, 0.0798, 1.9019, 0.0220, 0.0982, 0.0035, 0.6217, 0.0603, 28.4668, 0.4076, 1.2589, 0.0169, 8.2552, 0.3280