some large clusters need more time for MSA calc

kbaseapps · Jan 10, 2024 · e7e3219 · e7e3219
1 parent 8807465
commit e7e3219
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/lib/kb_phylogenomics/kb_phylogenomicsImpl.py b/lib/kb_phylogenomics/kb_phylogenomicsImpl.py
@@ -9525,7 +9525,7 @@ def score_orthologs_evolutionary_rates(self, ctx, params):
                 nuc_msa_file = os.path.join(msa_run_dir, cluster_id+'-muscle'+'.fna')
                 aa_msa_file = os.path.join(msa_run_dir, cluster_id+'-muscle'+'.faa')
                 max_iters = 16
-                max_hours = 0.5
+                max_hours = 4.0
 
                 self._run_muscle (nuc_in_file, nuc_msa_file, max_iters, max_hours)
                 self._run_muscle (aa_in_file, aa_msa_file, max_iters, max_hours)