polish docs (#43)

* updated docs

* changed Logo

* fixed sidebar

* fixed google search

Makefile

@@ -13,7 +13,7 @@ sync:
 	nbdev_update_lib
 
 docs_serve: docs
-	cd docs && bundle exec jekyll serve
+	cd docs && bundle exec jekyll serve 
 
 docs: $(SRC)
 	nbdev_build_docs

docs/.gitignore

@@ -0,0 +1,2 @@
+_site/
+.netlify/

docs/Gemfile

@@ -6,5 +6,4 @@ gem 'github-pages', group: :jekyll_plugins
 gem "nokogiri", "< 1.10.9"
 gem "jekyll", ">= 3.7"
 gem "kramdown", ">= 2.3.0"
-gem "jekyll-remote-theme"
-gem "webrick", "1.7.0"
+gem "jekyll-remote-theme"

docs/Gemfile.lock

@@ -1,7 +1,7 @@
 GEM
   remote: https://rubygems.org/
   specs:
-    activesupport (6.0.3.5)
+    activesupport (6.0.3.4)
       concurrent-ruby (~> 1.0, >= 1.0.2)
       i18n (>= 0.7, < 2)
       minitest (~> 5.1)
@@ -16,7 +16,7 @@ GEM
     colorator (1.1.0)
     commonmarker (0.17.13)
       ruby-enum (~> 0.5)
-    concurrent-ruby (1.1.8)
+    concurrent-ruby (1.1.7)
     dnsruby (1.61.5)
       simpleidn (~> 0.1)
     em-websocket (0.5.2)
@@ -34,7 +34,7 @@ GEM
     ffi (1.14.2)
     forwardable-extended (2.6.0)
     gemoji (3.0.1)
-    github-pages (211)
+    github-pages (209)
       github-pages-health-check (= 1.16.1)
       jekyll (= 3.9.0)
       jekyll-avatar (= 0.7.0)
@@ -52,7 +52,7 @@ GEM
       jekyll-relative-links (= 0.6.1)
       jekyll-remote-theme (= 0.4.2)
       jekyll-sass-converter (= 1.5.2)
-      jekyll-seo-tag (= 2.7.1)
+      jekyll-seo-tag (= 2.6.1)
       jekyll-sitemap (= 1.4.0)
       jekyll-swiss (= 1.0.0)
       jekyll-theme-architect (= 0.1.1)
@@ -76,7 +76,7 @@ GEM
       mercenary (~> 0.3)
       minima (= 2.5.1)
       nokogiri (>= 1.10.4, < 2.0)
-      rouge (= 3.26.0)
+      rouge (= 3.23.0)
       terminal-table (~> 1.4)
     github-pages-health-check (1.16.1)
       addressable (~> 2.3)
@@ -143,8 +143,8 @@ GEM
       rubyzip (>= 1.3.0, < 3.0)
     jekyll-sass-converter (1.5.2)
       sass (~> 3.4)
-    jekyll-seo-tag (2.7.1)
-      jekyll (>= 3.8, < 5.0)
+    jekyll-seo-tag (2.6.1)
+      jekyll (>= 3.3, < 5.0)
     jekyll-sitemap (1.4.0)
       jekyll (>= 3.7, < 5.0)
     jekyll-swiss (1.0.0)
@@ -201,7 +201,7 @@ GEM
     kramdown-parser-gfm (1.1.0)
       kramdown (~> 2.0)
     liquid (4.0.3)
-    listen (3.4.1)
+    listen (3.4.0)
       rb-fsevent (~> 0.10, >= 0.10.3)
       rb-inotify (~> 0.9, >= 0.9.10)
     mercenary (0.3.6)
@@ -224,10 +224,10 @@ GEM
     rb-inotify (0.10.1)
       ffi (~> 1.0)
     rexml (3.2.4)
-    rouge (3.26.0)
-    ruby-enum (0.9.0)
+    rouge (3.23.0)
+    ruby-enum (0.8.0)
       i18n
-    ruby2_keywords (0.0.4)
+    ruby2_keywords (0.0.2)
     rubyzip (2.3.0)
     safe_yaml (1.0.5)
     sass (3.7.4)
@@ -238,7 +238,7 @@ GEM
     sawyer (0.8.2)
       addressable (>= 2.3.5)
       faraday (> 0.8, < 2.0)
-    simpleidn (0.2.1)
+    simpleidn (0.1.1)
       unf (~> 0.1.4)
     terminal-table (1.8.0)
       unicode-display_width (~> 1.1, >= 1.1.1)
@@ -251,7 +251,6 @@ GEM
       unf_ext
     unf_ext (0.0.7.7)
     unicode-display_width (1.7.0)
-    webrick (1.7.0)
     zeitwerk (2.4.2)
 
 PLATFORMS
@@ -263,7 +262,6 @@ DEPENDENCIES
   jekyll-remote-theme
   kramdown (>= 2.3.0)
   nokogiri (< 1.10.9)
-  webrick (= 1.7.0)
 
 BUNDLED WITH
-   2.2.9
+   2.1.4

docs/_config.yml

@@ -2,9 +2,8 @@ repository: kbressem/faimed3d
 output: web
 topnav_title: faimed3d
 site_title: faimed3d
-company_name: Keno Bressem
-description: Add on to fastai for volumetric medical data
-google_search: 000837339549978028235:vh0pq0omtgr
+description: A addon to fastai for volumetric medical data
+google_search: a5fee9aeb028b0999
 use_math: true
 google_analytics:
 twitter_username: k_bressem
@@ -64,5 +63,3 @@ plugins:
     - jekyll-remote-theme
 
 remote_theme: fastai/nbdev-jekyll-theme
-
-#theme: jekyll-theme-minimal

docs/_data/sidebars/home_sidebar.yml

@@ -13,32 +13,36 @@ entries:
       title: Basics
       url: basics.html
     - output: web,pdf
-      title: Image preprocessing
+      title: Preprocessing
       url: preprocessing.html
     - output: web,pdf
-      title: transforms
+      title: Augmentations
       url: transforms.html
     - output: web,pdf
-      title: faimed3d dataloaders for 3D images
+      title: Dataloaders
       url: dataloaders.html
-    - output: web,pdf
-      title: faimed3d layers and functions
-      url: layers.html
-    - output: web,pdf
-      title: faimed3d wrapper for learner class
-      url: learner.html
-    - output: web,pdf
-      title: 3D AlexNet
-      url: models.alexnet.html
-    - output: web,pdf
-      title: 3D ResNet
-      url: models.resnet.html
-    - output: web,pdf
-      title: EfficientNet
-      url: model.efficientnet.html
-    - output: web,pdf
-      title: 3D UNet
-      url: models.unet.html
+      subfolders:
+      - output: web
+        subfolderitems:
+        - output: web,pdf
+          title: Layers
+          url: layers.html
+        - output: web,pdf
+          title: Learner
+          url: learner.html
+        - output: web,pdf
+          title: AlexNet
+          url: models.alexnet.html
+        - output: web,pdf
+          title: ResNet
+          url: models.resnet.html
+        - output: web,pdf
+          title: EfficientNet
+          url: model.efficientnet.html
+        - output: web,pdf
+          title: U-Net
+          url: models.unet.html
+        title: Models
     - output: web,pdf
       title: Losses and metrics
       url: models.losses.html