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helena-bethany authored Jul 9, 2024
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Expand Up @@ -17,6 +17,13 @@ It also allows high-throughput growth phenotype simulation via Flux Balance Anal
usage profiles and Single Gene Knockout analysis (SGK) to predict the impacts of single gene knockout mutations. These
can be performed under a variety of growth conditions and mediums.

## Compatible pan-reference metabolic models

|Species |Database |Reference |
|----------- |----------- |----------- |
|_Klebsiella pneumoniae_ Species Complex|[Model & Associated Sequences](https://github.com/kelwyres/KpSC-pan-metabolic-model)|[Cooper 2024, _MGen_](https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.001206)|
|_Bacillus subtilis_ |[Model](https://github.com/SBGlab/Bacillus_Subtilis_multistrain_GEM/tree/main/iBB1018) & [Gene Annotations](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000009045.1/) |[Blázquez 2023, _Int. J. Mol. Sci._](https://www.mdpi.com/1422-0067/24/8/7091)|

## Licence and citation

Bactabolize is freely available under a [GNU General Public License v3.0](https://www.gnu.org/licenses/gpl-3.0.en.html).
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