https://github.com/kevinrue/velociraptor/issues/80#issuecomment-23204…

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kevinrue · Aug 30, 2024 · 17afe4f · 17afe4f
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commit 17afe4f
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: velociraptor
 Title: Toolkit for Single-Cell Velocity
-Version: 1.15.9
+Version: 1.15.11
 Date: 2024-08-29
 Authors@R: c(person("Kevin", "Rue-Albrecht", role = c("aut", "cre"), email = "[email protected]", comment = c(ORCID = "0000-0003-3899-3872")),
     person("Aaron", "Lun", role="aut", email="[email protected]", comment = c(ORCID = '0000-0002-3564-4813')),

diff --git a/inst/envs/Windows.yaml b/inst/envs/Windows.yaml
@@ -3,7 +3,7 @@ channels:
 - bioconda
 - conda-forge
 dependencies:
-- anndata=0.10.5.post1=pyhd8ed1ab_0
+- anndata=0.10.9=pyhd8ed1ab_0
 - array-api-compat=1.8=pyhd8ed1ab_0
 - brotli=1.1.0=hcfcfb64_1
 - brotli-bin=1.1.0=hcfcfb64_1
@@ -12,26 +12,26 @@ dependencies:
 - cached-property=1.5.2=hd8ed1ab_1
 - cached_property=1.5.2=pyha770c72_1
 - certifi=2024.7.4=pyhd8ed1ab_0
-- click=8.1.7=win_pyh7428d3b_0
 - colorama=0.4.6=pyhd8ed1ab_0
-- contourpy=1.3.0=py310hc19bc0b_0
+- contourpy=1.3.0=py311h3257749_0
 - cycler=0.12.1=pyhd8ed1ab_0
 - exceptiongroup=1.2.2=pyhd8ed1ab_0
-- fonttools=4.53.1=py310ha8f682b_0
+- fonttools=4.53.1=py311he736701_0
 - freetype=2.12.1=hdaf720e_2
 - get-annotations=0.1.2=pyhd8ed1ab_0
 - glib=2.80.3=h7025463_2
 - glib-tools=2.80.3=h4394cf3_2
 - gst-plugins-base=1.24.6=hb0a98b8_0
 - gstreamer=1.24.6=h5006eae_0
-- h5py=3.11.0=nompi_py310h2b0be38_102
+- h5py=3.11.0=nompi_py311h67016bb_102
 - hdf5=1.14.3=nompi_h2b43c12_105
 - icu=73.2=h63175ca_0
 - intel-openmp=2024.2.1=h57928b3_1083
 - joblib=1.4.2=pyhd8ed1ab_0
-- kiwisolver=1.4.5=py310hc19bc0b_2
+- kiwisolver=1.4.5=py311h3257749_2
 - krb5=1.21.3=hdf4eb48_0
 - lcms2=2.16=h67d730c_0
+- legacy-api-wrap=1.4=pyhd8ed1ab_1
 - lerc=4.0.0=h63175ca_0
 - libaec=1.1.3=h63175ca_0
 - libblas=3.9.0=23_win64_mkl
@@ -42,6 +42,7 @@ dependencies:
 - libclang13=18.1.8=default_ha5278ca_3
 - libcurl=8.9.1=h18fefc2_0
 - libdeflate=1.21=h2466b09_0
+- libexpat=2.6.2=h63175ca_0
 - libffi=3.4.2=h8ffe710_5
 - libglib=2.80.3=h7025463_2
 - libhwloc=2.11.1=default_h8125262_1000
@@ -60,67 +61,66 @@ dependencies:
 - libxcb=1.16=h013a479_1
 - libxml2=2.12.7=h0f24e4e_4
 - libzlib=1.3.1=h2466b09_1
-- llvmlite=0.43.0=py310h0288bfe_0
-- loompy=3.0.6=py_0
+- llvmlite=0.43.0=py311h7deaa30_0
+- loompy=2.0.16=py_0
 - m2w64-gcc-libgfortran=5.3.0=6
 - m2w64-gcc-libs=5.3.0=7
 - m2w64-gcc-libs-core=5.3.0=7
 - m2w64-gmp=6.1.0=2
 - m2w64-libwinpthread-git=5.0.0.4634.697f757=2
-- matplotlib=3.7.3=py310h5588dad_0
-- matplotlib-base=3.7.3=py310hc9baf74_0
+- matplotlib=3.6.3=py311h1ea47a8_0
+- matplotlib-base=3.6.3=py311h6e989c2_0
 - mkl=2024.1.0=h66d3029_694
 - msys2-conda-epoch=20160418=1
-- munkres=1.1.4=pyh9f0ad1d_0
+- munkres=1.0.7=py_1
 - natsort=8.4.0=pyhd8ed1ab_0
-- networkx=3.2=pyhd8ed1ab_0
-- numba=0.60.0=py310h7793332_0
-- numpy=1.26.4=py310hf667824_0
-- numpy_groupies=0.11.2=pyhd8ed1ab_0
+- networkx=3.3=pyhd8ed1ab_1
+- numba=0.60.0=py311h0673bce_0
+- numpy=1.26.4=py311h0b4df5a_0
 - openjpeg=2.5.2=h3d672ee_0
 - openssl=3.3.1=h2466b09_3
 - packaging=24.1=pyhd8ed1ab_0
-- pandas=1.3.5=py310hf5e1058_0
+- pandas=1.5.2=py311hf63dbb6_2
 - patsy=0.5.6=pyhd8ed1ab_0
 - pcre2=10.44=h3d7b363_2
-- pillow=10.4.0=py310h3e38d90_0
+- pillow=10.4.0=py311h5592be9_0
 - pip=24.2=pyh8b19718_1
 - ply=3.11=pyhd8ed1ab_2
 - pthread-stubs=0.4=hcd874cb_1001
 - pthreads-win32=2.9.1=hfa6e2cd_3
 - pynndescent=0.5.13=pyhff2d567_0
 - pyparsing=3.1.4=pyhd8ed1ab_0
-- pyqt=5.15.9=py310h1fd54f2_5
-- pyqt5-sip=12.12.2=py310h00ffb61_5
-- python=3.10.14=h4de0772_0_cpython
+- pyqt=5.15.9=py311h125bc19_5
+- pyqt5-sip=12.12.2=py311h12c1d0e_5
+- python=3.11.9=h631f459_0_cpython
 - python-dateutil=2.9.0=pyhd8ed1ab_0
-- python_abi=3.10=5_cp310
+- python_abi=3.11=5_cp311
 - pytz=2024.1=pyhd8ed1ab_0
 - qt-main=5.15.8=h06adc49_23
-- scanpy=1.9.8=pyhd8ed1ab_0
-- scikit-learn=1.5.1=py310hf2a6c47_0
-- scipy=1.14.1=py310h46043a1_0
+- scanpy=1.10.2=pyhd8ed1ab_0
+- scikit-learn=1.5.1=py311hdcb8d17_0
+- scipy=1.13.1=py311hd4686c6_0
 - scvelo=0.2.5=pyhdfd78af_0
 - seaborn=0.13.2=hd8ed1ab_2
 - seaborn-base=0.13.2=pyhd8ed1ab_2
 - session-info=1.0.0=pyhd8ed1ab_0
-- setuptools=59.8.0=py310h5588dad_1
-- sip=6.7.12=py310h00ffb61_0
+- setuptools=72.2.0=pyhd8ed1ab_0
+- sip=6.7.12=py311h12c1d0e_0
 - six=1.16.0=pyh6c4a22f_0
-- statsmodels=0.14.1=py310h3e78b6c_0
+- statsmodels=0.14.2=py311h0a17f05_0
 - stdlib-list=0.10.0=pyhd8ed1ab_0
 - tbb=2021.12.0=hc790b64_4
 - threadpoolctl=3.5.0=pyhc1e730c_0
 - tk=8.6.13=h5226925_1
 - toml=0.10.2=pyhd8ed1ab_0
 - tomli=2.0.1=pyhd8ed1ab_0
-- tornado=6.4.1=py310ha8f682b_1
+- tornado=6.4.1=py311he736701_1
 - tqdm=4.66.5=pyhd8ed1ab_0
+- typing=3.10.0.0=pyhd8ed1ab_1
 - typing_extensions=4.12.2=pyha770c72_0
 - tzdata=2024a=h8827d51_1
 - ucrt=10.0.22621.0=h57928b3_0
-- umap-learn=0.5.6=py310h5588dad_1
-- unicodedata2=15.1.0=py310h8d17308_0
+- umap-learn=0.5.6=py311h1ea47a8_1
 - vc=14.3=h8a93ad2_20
 - vc14_runtime=14.40.33810=hcc2c482_20
 - vs2015_runtime=14.40.33810=h3bf8584_20