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Package: sccore | ||
Title: Core Utilities for Single-Cell RNA-Seq | ||
Version: 1.0.4 | ||
Version: 1.0.5 | ||
Authors@R: c(person("Viktor","Petukhov", email="[email protected]", role="aut"), person("Rasmus","Rydbirk", email="[email protected]", role="aut"), person("Peter", "Kharchenko", email = "[email protected]", role = "aut"), person("Evan","Biederstedt", email="[email protected]", role=c("aut", "cre"))) | ||
Description: Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels. | ||
License: GPL-3 | ||
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PKG_CXXFLAGS=-I"../inst/include" | ||
PKG_LIBS=-L/usr/lib/ -L"." -lpthread -lstdc++ -lm `$(R_HOME)/bin/Rscript -e "Rcpp:::LdFlags()"` $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) | ||
PKG_LIBS=-lpthread `$(R_HOME)/bin/Rscript -e "Rcpp:::LdFlags()"` $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) |
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PKG_CXXFLAGS=-I"../inst/include" | ||
PKG_LIBS=-L/usr/lib/ -L"." -lpthread -lstdc++ -lm $(shell "${R_HOME}/bin${R_ARCH_BIN}/Rscript.exe" -e "Rcpp:::LdFlags()") $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) | ||
PKG_LIBS=-lpthread $(shell "${R_HOME}/bin${R_ARCH_BIN}/Rscript.exe" -e "Rcpp:::LdFlags()") $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) |