Refer to Cdbgtricks repository for details on how to install it.
conda install -c bioconda bifrost
To install GGCAT, you can refer to the repository Note that the version used is this
To install Fulgor, you can check the repository Note that the version used is this
curl --cookie zenodo-cookies.txt "https://zenodo.org/records/7506049/files/human-dataset-part1.tar.xz?download=1" --output human_genomes1.tar.xz
curl --cookie zenodo-cookies.txt "https://zenodo.org/records/7506425/files/human-dataset-part2.tar.xz?download=1" --output human_genomes2.tar.xz
mkdir human_genomes
Then extract the files:
tar -xf human_genomes1.tar.xz -C human_genomes
tar -xf human_genomes2.tar.xz -C human_genomes
rm human_genomes1.tar.xz
rm human_genomes2.tar.xz
The fasta files are in the human_genomes directory
mkdir ecoli
bash ecoli_downloads.sh
The script script.sh measure the disk and memory usage. You need to set _user to your username.