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Added support for ASHLAR's fileseries/filepattern feature (#535) #512

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Added support for ASHLAR's fileseries/filepattern feature (#535)

Added support for ASHLAR's fileseries/filepattern feature (#535) #512

Run time

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Job Run time
setup
1m 21s
setup
1m 21s
ex001-by-step
16m 20s
ex001-by-step
16m 20s
ex002
31m 25s
ex002
31m 25s
ex001 (--viz)
5m 43s
ex001 (--viz)
5m 50s
ex001 (--start-at illumination --stop-at registration)
2m 32s
ex001 (--start-at illumination --stop-at registration)
2m 32s
ex001 (--background)
5m 43s
ex001 (--background)
5m 51s
ex001 (--background --background-method imagej-rolling-ball)
5m 45s
ex001 (--background --background-method imagej-rolling-ball)
5m 52s
ex001 (--segmentation cypository --cypository-opts '--channel 10 --scalingFactor 2' --s3seg-opts ...
5m 42s
ex001 (--segmentation cypository --cypository-opts '--channel 10 --scalingFactor 2' --s3seg-opts ...
5m 49s
ex001 (--segmentation ilastik,mesmer)
4m 39s
ex001 (--segmentation ilastik,mesmer)
4m 39s
ex001 (--segmentation cellpose --mcquant-opts '--masks *masks.tif')
5m 44s
ex001 (--segmentation cellpose --mcquant-opts '--masks *masks.tif')
5m 50s
ex001 (--viz --segmentation ilastik -profile singularity)
5m 24s
ex001 (--viz --segmentation ilastik -profile singularity)
5m 31s
3h 1m 18s