Resolution of worker process in GPU profile

labsyspharm · Dec 4, 2024 · d7082e2 · d7082e2
1 parent 9122980
commit d7082e2
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/.gitpod.yml b/.gitpod.yml
@@ -6,7 +6,7 @@ tasks:
         mcp = yaml.safe_load(open('config/defaults.yml'));\
         mods = mcp['modules'];\
         [print(m['container'] + ':' + m['version']) for m in \
-          [mods['registration'], mods['segmentation'][0],\
+          [mods['registration'], mods['segmentation'][3],\
            mods['watershed'], mods['quantification']]]"\
       | while read line ; do docker pull $line ; done
   - name: Default workdir

diff --git a/nextflow.config b/nextflow.config
@@ -60,7 +60,7 @@ profiles {
     singularity.runOptions = '-C -H "$PWD" --nv'
 
     process{
-      withName:worker {
+      withName: 'segmentation:worker' {
         queue = 'gpu'
         clusterOptions = '--gres=gpu:1'
       }