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πŸ’š Fix installation
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falexwolf committed Dec 31, 2024
1 parent acb66ae commit 522d6ed
Showing 1 changed file with 3 additions and 5 deletions.
8 changes: 3 additions & 5 deletions noxfile.py
Original file line number Diff line number Diff line change
Expand Up @@ -27,16 +27,14 @@ def lint(session: nox.Session) -> None:
["hub-local", "hub-prod", "hub-cloud", "storage", "docs"],
)
def install(session: nox.Session, group: str) -> None:
no_deps_packages = "git+https://github.com/laminlabs/lnschema-core git+https://github.com/laminlabs/wetlab git+https://github.com/laminlabs/lamin-cli"
schema_deps = f"""uv pip install --system git+https://github.com/laminlabs/bionty@integrate-lnschema-core git+https://github.com/laminlabs/lamindb
no_deps_packages = "git+https://github.com/laminlabs/lamindb@integrate-lnschema-core git+https://github.com/laminlabs/wetlab git+https://github.com/laminlabs/lamin-cli"
schema_deps = f"""uv pip install --system git+https://github.com/laminlabs/bionty@integrate-lnschema-core
uv pip install --system --no-deps {no_deps_packages}
"""
if group == "hub-cloud":
cmds = schema_deps + "uv pip install --system ./laminhub/rest-hub line_profiler"
elif group == "docs":
cmds = (
"""uv pip install --system git+https://github.com/laminlabs/lnschema-core"""
)
cmds = """uv pip install --system git+https://github.com/laminlabs/lamindb@integrate-lnschema-core"""
elif group == "storage":
cmds = """uv pip install --system gcsfs"""
cmds += """\nuv pip install --system huggingface_hub"""
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