👷 Add lamindb devel CI workflow

.github/workflows/R-CMD-check-devel.yaml

@@ -0,0 +1,93 @@
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+name: R-CMD-check-devel.yaml
+
+permissions: read-all
+
+jobs:
+  R-CMD-check-devel:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - { os: ubuntu-latest, r: "release", python: "3.x" }
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+      LAMIN_API_KEY: ${{ secrets.LAMIN_API_KEY_TESTUSER1 }}
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.config.python }}
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck, local::.
+          needs: check
+
+      - name: Install {tiledbsoma}
+        if: runner.os == 'Linux'
+        run: |
+          options(repos = c("https://chanzuckerberg.r-universe.dev", getOption("repos")))
+          pak::pkg_install("tiledbsoma")
+        shell: Rscript {0}
+
+      - name: Setup Python environment with devel lamindb
+        run: |
+          laminr::install_lamindb(extra_packages = c("s3fs"))
+          reticulate::use_virtualenv("r-lamindb")
+          reticulate::py_install("git+https://github.com/laminlabs/lamindb.git")
+        shell: Rscript {0}
+
+      - name: Log in to Lamin
+        run: |
+          reticulate::use_virtualenv("r-lamindb")
+          laminr::lamin_login()
+        shell: Rscript {0}
+
+      - name: Set lamindata as default instance
+        run: |
+          reticulate::use_virtualenv("r-lamindb")
+          laminr::lamin_connect("laminlabs/lamindata")
+        shell: Rscript {0}
+
+      - name: Check whether we can import lamindb and connect to the default instance
+        run: |
+          reticulate::use_virtualenv("r-lamindb")
+          reticulate::py_config()
+          reticulate::import("lamindb")
+          laminr::connect()
+        shell: Rscript {0}
+
+      - name: Check
+        env:
+          _R_CHECK_CRAN_INCOMING_REMOTE_: false
+        run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
+        shell: Rscript {0}
+
+      - name: Upload check results
+        if: failure()
+        uses: actions/upload-artifact@main
+        with:
+          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
+          path: check