Fix macOS runner (#66)

* Install OpenBLAS on macOS in check action

* Install meson=1.5.0 on macOS in check action

* Try using pip without --user

* Fix typo in pip command

* Use hack to get homebrew to install meson v1.5.2

See https://nelson.cloud/how-to-install-older-versions-of-homebrew-packages/
for instructions

* Try getting homebrew to remove meson first

* Remove which calls`

* Stop homebrew removing meson

* Try instlal pkg-config with homebrew

* Try using conda on macOS

* try workaround

* attempt 2

* alternative solution

* export environment variables

* try not installing openblas

* another attempt

* remove pep517

* another attempt

* try with gcc

* fix version

* yet another experiment

* pin version of numpy

* fix ga

* pin to numpy 2.0

* try with python 3.12

* simplify

* switch to macos-latest

* simplify

* try without installing scipy

* simplify

* update changelog

---------

Co-authored-by: Luke Zappia <[email protected]>

.github/workflows/R-CMD-check.yaml

@@ -20,11 +20,12 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - { os: macos-latest, r: "release" }
-          - { os: windows-latest, r: "release" }
-          - { os: ubuntu-latest, r: "devel", http-user-agent: "release" }
-          - { os: ubuntu-latest, r: "release" }
-          - { os: ubuntu-latest, r: "oldrel-1" }
+          # note: we use python 3.12 on mac os x so we can install scipy 1.13 from a wheel
+          - { os: macos-latest, r: "release", python: "3.12" }
+          - { os: windows-latest, r: "release", python: "3.x" }
+          - { os: ubuntu-latest, r: "devel", http-user-agent: "release", python: "3.x" }
+          - { os: ubuntu-latest, r: "release", python: "3.x" }
+          - { os: ubuntu-latest, r: "oldrel-1", python: "3.9" }
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
@@ -38,12 +39,26 @@ jobs:
 
       - uses: r-lib/actions/setup-tinytex@v2
 
+      - uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.config.python }}
+
       - uses: r-lib/actions/setup-r@v2
         with:
           r-version: ${{ matrix.config.r }}
           http-user-agent: ${{ matrix.config.http-user-agent }}
           use-public-rspm: true
 
+      # manually installing openblas as a workaround for issue
+      # https://github.com/laminlabs/laminr/issues/57
+      - name: Install OpenBLAS
+        if: runner.os == 'macOS'
+        run: |
+          brew install openblas
+          OPENBLAS=$(brew --prefix openblas)
+          echo "LDFLAGS=-L$OPENBLAS/lib" >> $GITHUB_ENV
+          echo "CPPFLAGS=-I$OPENBLAS/include" >> $GITHUB_ENV
+
       - name: Install lamindb
         run: |
           pip install lamindb[aws]

CHANGELOG.md

@@ -84,6 +84,10 @@ For more information, please visit the [package website](https://laminr.lamin.ai
 
 * Add alternative error message when no message is returned from the API (PR #30).
 
+* Manually install OpenBLAS on macOS (PR #62).
+
+* Switch to Python 3.12 for being able to install scipy on macOS (PR #66).
+
 # laminr v0.0.1
 
 Initial POC implementation of the LaminDB API client for R.