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🚚 Migrate to lamindb 1.0 (#8)
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@falexwolf
falexwolf authored Jan 11, 2025
1 parent b3074be commit 2933ed4
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2 changes: 1 addition & 1 deletion noxfile.py
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Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@ def lint(session: nox.Session) -> None:

@nox.session()
def build(session):
branch = "main" if IS_PR else "release" # point back to "release"
branch = "migrate" if IS_PR else "release" # point back to "release"
install_lamindb(session, branch=branch, extras="bionty,aws")
run(session, "uv pip install --system .[dev]")
run_pytest(session)
336 changes: 336 additions & 0 deletions ourprojects/migrations/0002_lamindbv1.py
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@@ -0,0 +1,336 @@
# Generated by Django 5.2 on 2025-01-07 14:37

import django.db.models.deletion
import lamindb.base.fields
import lamindb.base.users
import lamindb.models
from django.db import migrations, models


class Migration(migrations.Migration):
dependencies = [
("ourprojects", "0001_initial"),
]

operations = [
migrations.AddField(
model_name="person",
name="_branch_code",
field=models.SmallIntegerField(db_index=True, default=1, db_default=1),
),
migrations.AddField(
model_name="project",
name="_branch_code",
field=models.SmallIntegerField(db_index=True, default=1, db_default=1),
),
migrations.AddField(
model_name="reference",
name="_branch_code",
field=models.SmallIntegerField(db_index=True, default=1, db_default=1),
),
migrations.AddField(
model_name="person",
name="aux",
field=models.JSONField(default=None, db_default=None, null=True),
),
migrations.AddField(
model_name="project",
name="aux",
field=models.JSONField(default=None, db_default=None, null=True),
),
migrations.AddField(
model_name="reference",
name="aux",
field=models.JSONField(default=None, db_default=None, null=True),
),
migrations.CreateModel(
name="CollectionProject",
fields=[
(
"created_at",
lamindb.base.fields.DateTimeField(auto_now_add=True, db_index=True),
),
("id", models.BigAutoField(primary_key=True, serialize=False)),
(
"collection",
lamindb.base.fields.ForeignKey(
blank=True,
on_delete=django.db.models.deletion.CASCADE,
related_name="links_project",
to="lamindb.collection",
),
),
(
"created_by",
lamindb.base.fields.ForeignKey(
blank=True,
default=lamindb.base.users.current_user_id,
on_delete=django.db.models.deletion.PROTECT,
related_name="+",
to="lamindb.user",
),
),
(
"project",
lamindb.base.fields.ForeignKey(
blank=True,
on_delete=django.db.models.deletion.PROTECT,
related_name="links_collection",
to="ourprojects.project",
),
),
(
"run",
lamindb.base.fields.ForeignKey(
blank=True,
default=lamindb.models.current_run,
null=True,
on_delete=django.db.models.deletion.PROTECT,
related_name="+",
to="lamindb.run",
),
),
],
options={
"unique_together": {("collection", "project")},
},
bases=(lamindb.models.LinkORM, models.Model),
),
migrations.AddField(
model_name="project",
name="collections",
field=models.ManyToManyField(
related_name="projects",
through="ourprojects.CollectionProject",
to="lamindb.collection",
),
),
migrations.CreateModel(
name="CollectionReference",
fields=[
(
"created_at",
lamindb.base.fields.DateTimeField(auto_now_add=True, db_index=True),
),
("id", models.BigAutoField(primary_key=True, serialize=False)),
(
"collection",
lamindb.base.fields.ForeignKey(
blank=True,
on_delete=django.db.models.deletion.CASCADE,
related_name="links_reference",
to="lamindb.collection",
),
),
(
"created_by",
lamindb.base.fields.ForeignKey(
blank=True,
default=lamindb.base.users.current_user_id,
on_delete=django.db.models.deletion.PROTECT,
related_name="+",
to="lamindb.user",
),
),
(
"reference",
lamindb.base.fields.ForeignKey(
blank=True,
on_delete=django.db.models.deletion.PROTECT,
related_name="links_collection",
to="ourprojects.reference",
),
),
(
"run",
lamindb.base.fields.ForeignKey(
blank=True,
default=lamindb.models.current_run,
null=True,
on_delete=django.db.models.deletion.PROTECT,
related_name="+",
to="lamindb.run",
),
),
],
options={
"unique_together": {("collection", "reference")},
},
bases=(lamindb.models.LinkORM, models.Model),
),
migrations.AddField(
model_name="reference",
name="collections",
field=models.ManyToManyField(
related_name="references",
through="ourprojects.CollectionReference",
to="lamindb.collection",
),
),
migrations.CreateModel(
name="TransformProject",
fields=[
(
"created_at",
lamindb.base.fields.DateTimeField(auto_now_add=True, db_index=True),
),
("id", models.BigAutoField(primary_key=True, serialize=False)),
(
"created_by",
lamindb.base.fields.ForeignKey(
blank=True,
default=lamindb.base.users.current_user_id,
on_delete=django.db.models.deletion.PROTECT,
related_name="+",
to="lamindb.user",
),
),
(
"project",
lamindb.base.fields.ForeignKey(
blank=True,
on_delete=django.db.models.deletion.PROTECT,
related_name="links_transform",
to="ourprojects.project",
),
),
(
"run",
lamindb.base.fields.ForeignKey(
blank=True,
default=lamindb.models.current_run,
null=True,
on_delete=django.db.models.deletion.PROTECT,
related_name="+",
to="lamindb.run",
),
),
(
"transform",
lamindb.base.fields.ForeignKey(
blank=True,
on_delete=django.db.models.deletion.CASCADE,
related_name="links_project",
to="lamindb.transform",
),
),
],
options={
"unique_together": {("transform", "project")},
},
bases=(lamindb.models.LinkORM, models.Model),
),
migrations.AddField(
model_name="project",
name="transforms",
field=models.ManyToManyField(
related_name="projects",
through="ourprojects.TransformProject",
to="lamindb.transform",
),
),
migrations.CreateModel(
name="TransformReference",
fields=[
(
"created_at",
lamindb.base.fields.DateTimeField(auto_now_add=True, db_index=True),
),
("id", models.BigAutoField(primary_key=True, serialize=False)),
(
"created_by",
lamindb.base.fields.ForeignKey(
blank=True,
default=lamindb.base.users.current_user_id,
on_delete=django.db.models.deletion.PROTECT,
related_name="+",
to="lamindb.user",
),
),
(
"reference",
lamindb.base.fields.ForeignKey(
blank=True,
on_delete=django.db.models.deletion.PROTECT,
related_name="links_transform",
to="ourprojects.reference",
),
),
(
"run",
lamindb.base.fields.ForeignKey(
blank=True,
default=lamindb.models.current_run,
null=True,
on_delete=django.db.models.deletion.PROTECT,
related_name="+",
to="lamindb.run",
),
),
(
"transform",
lamindb.base.fields.ForeignKey(
blank=True,
on_delete=django.db.models.deletion.CASCADE,
related_name="links_reference",
to="lamindb.transform",
),
),
],
options={
"unique_together": {("transform", "reference")},
},
bases=(lamindb.models.LinkORM, models.Model),
),
migrations.AddField(
model_name="reference",
name="transforms",
field=models.ManyToManyField(
related_name="references",
through="ourprojects.TransformReference",
to="lamindb.transform",
),
),
migrations.AddField(
model_name="person",
name="space",
field=lamindb.base.fields.ForeignKey(
blank=True,
default=1,
on_delete=django.db.models.deletion.PROTECT,
to="lamindb.space",
),
),
migrations.AddField(
model_name="project",
name="space",
field=lamindb.base.fields.ForeignKey(
blank=True,
default=1,
on_delete=django.db.models.deletion.PROTECT,
to="lamindb.space",
),
),
migrations.AddField(
model_name="reference",
name="space",
field=lamindb.base.fields.ForeignKey(
blank=True,
default=1,
on_delete=django.db.models.deletion.PROTECT,
to="lamindb.space",
),
),
migrations.RemoveField(
model_name="person",
name="_previous_runs",
),
migrations.RemoveField(
model_name="project",
name="_previous_runs",
),
migrations.RemoveField(
model_name="reference",
name="_previous_runs",
),
]
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