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more snakemake bug fixes #341

Merged
merged 5 commits into from
Nov 13, 2023
Merged

more snakemake bug fixes #341

merged 5 commits into from
Nov 13, 2023

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ayushkamat
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  • intermediate outputs from snakemake tasks are now uploaded to latch
  • bug fix where /root paths caused an iteration over the entire root directory

Signed-off-by: Ayush Kamat <[email protected]>
latch_cli/snakemake/workflow.py Outdated Show resolved Hide resolved
latch_cli/snakemake/workflow.py Outdated Show resolved Hide resolved
@ayushkamat ayushkamat merged commit 20e5fae into main Nov 13, 2023
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@ayushkamat ayushkamat deleted the ayush/hannah-sm-bugs branch November 13, 2023 18:39
def best_effort_display_name(x: str):
expr = re.compile(r"_+")
return expr.sub(" ", x).title().strip()
def update_mapping(cur: Path, stem: Path, remote: str, mapping: Dict[str, str]):
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pretty terrible name lol

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2 participants