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refactor dockerfile building #514

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merged 6 commits into from
Dec 13, 2024
Merged

refactor dockerfile building #514

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8d942e7
refactor dockerfile building
ayushkamat Dec 12, 2024
3a3884f
init
ayushkamat Dec 12, 2024
a340228
Merge branch 'main' of github.com:latchbio/latch into ayush/conda-df
ayushkamat Dec 12, 2024
1a59690
dur
ayushkamat Dec 12, 2024
05bc6e9
lock
ayushkamat Dec 12, 2024
dafb61d
bump ver + cl
ayushkamat Dec 13, 2024
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11 changes: 10 additions & 1 deletion pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -170,6 +170,9 @@ ignore = [

"ANN101",
"ANN102",
"ANN201",
"ANN202",
"ANN204",

"E402",
"E501",
Expand All @@ -178,10 +181,11 @@ ignore = [
"C408",
"C901",

"FA100",

"T201",
"T203",

"D415",

"SIM108",

Expand All @@ -198,6 +202,8 @@ ignore = [
"D105",
"D106",
"D107",
"D202",
"D415",

"TRY003",
"TRY300",
Expand All @@ -207,6 +213,8 @@ ignore = [

"PERF203",

"PLC0415",

"PLW2901",
"PLW0603",

Expand All @@ -229,6 +237,7 @@ ignore = [

"PD901",

"UP006",
"UP040",

"SIM112",
Expand Down
23 changes: 9 additions & 14 deletions src/latch_cli/centromere/ctx.py
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Original file line number Diff line number Diff line change
Expand Up @@ -40,6 +40,7 @@ class _Container:
image_name: str


# todo(ayush): cleanse this
class _CentromereCtx:
"""Manages state for interaction with centromere.

Expand Down Expand Up @@ -270,8 +271,7 @@ def __init__(
)
click.secho(f"`{new_meta}`", bold=True, fg="red", nl=False)
click.secho(
f" file:\n```\n{snakemake_metadata_example}```",
fg="red",
f" file:\n```\n{snakemake_metadata_example}```", fg="red"
)
if click.confirm(
click.style(
Expand Down Expand Up @@ -299,9 +299,10 @@ def __init__(
import subprocess

if system == "Linux":
res = subprocess.run(
["xdg-open", new_meta]
).returncode
res = subprocess.run([
"xdg-open",
new_meta,
]).returncode
elif system == "Darwin":
res = subprocess.run(["open", new_meta]).returncode
elif system == "Windows":
Expand All @@ -320,7 +321,7 @@ def __init__(
dedent(
"""
Make sure a `latch_metadata` exists in the Snakemake
project root or provide a metadata folder with the `--metadata-root` argument.""",
project root or provide a metadata folder with the `--metadata-root` argument."""
),
fg="red",
)
Expand Down Expand Up @@ -500,9 +501,7 @@ def get_old_centromere_info(self) -> Tuple[str, str]:
response = tinyrequests.post(
self.latch_provision_url,
headers=headers,
json={
"public_key": self.public_key,
},
json={"public_key": self.public_key},
)

resp = response.json()
Expand Down Expand Up @@ -559,11 +558,7 @@ def nucleus_get_image(self, task_name: str, version: Optional[str] = None) -> st

headers = {"Authorization": f"Bearer {self.token}"}
response = tinyrequests.post(
self.latch_get_image_url,
headers=headers,
json={
"task_name": task_name,
},
self.latch_get_image_url, headers=headers, json={"task_name": task_name}
)

resp = response.json()
Expand Down
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