Blendpy is a computational toolkit for investigating thermodynamic models of alloys using first-principles calculations

Table of contents

• Installation
• Usage
  • Geometry optimization
  • Dilute solution interpolation (DSI) model
    • Enthalpy of mixing
    • DSI model from pre-calculated data
    • Polymorphism
    • Phase diagram
• License
• Acknowledgements

Installation

Install blendpy effortlessly using pip, Python’s default package manager, by running the following command in your terminal:

pip install --upgrade pip
pip install blendpy

Usage

This comprehensive tutorial guides you through calculating alloy properties. In this section, you'll learn how to determine key parameters—such as the enthalpy of mixing, and the spinodal and binodal decomposition curves derived from phase diagrams. We start by defining the alloy components, move through geometry optimization, and conclude with advanced modeling techniques using the DSI model.

To start, provide a list of structure files (e.g., CIF or POSCAR) that represent your alloy components. For best accuracy, it is recommended that these files have been pre-optimized using the same calculator and parameters that will be used in the subsequent alloy property calculations.

If you already have these optimized structures, you may skip ahead to the "DSI model" section. If not, proceed to the "Geometry Optimization" section to prepare your structures for analysis.

Geometry optimization

For example, let's calculate the properties of an Au-Pt alloy. We begin by retrieving the Au (fcc) and Pt (fcc) geometries from ASE. Next, we optimize these geometries using the MACE calculator, which leverages machine learning interatomic potentials. Finally, we save the optimized structures for use in the DSI model. To achieve this, we will follow several key steps.

Step 1: Import the necessary modules from ASE and MACE:

from ase.io import write
from ase.build import bulk
from ase.optimize import BFGSLineSearch
from ase.filters import UnitCellFilter
from mace.calculators import mace_mp

Step 2: Create Atoms objects for gold (Au) and platinum (Pt) using the bulk function:

# Create Au and Pt Atoms object
gold = bulk("Au", cubic=True)
platinum = bulk("Pt", cubic=True)

Step 3: Create a MACE calculator object to optimize the structures and assign the calculator to the Atoms objects:

calc_mace = mace_mp(model="small",
                    dispersion=False,
                    default_dtype="float32",
                    device='cpu')

# Assign the calculator to the Atoms objects
gold.calc = calc_mace
platinum.calc = calc_mace

Step 4: Optimize the unit cells of Au and Pt using the BFGSLineSearch optimizer:

# Optimize Au and Pt unit cells
optimizer_gold = BFGSLineSearch(UnitCellFilter(gold))
optimizer_gold.run(fmax=0.01)

optimizer_platinum = BFGSLineSearch(UnitCellFilter(platinum))
optimizer_platinum.run(fmax=0.01)

Step 5: Save the optimized unit cells to CIF files:

# Save the optimized unit cells for Au and Pt
write("Au_relaxed.cif", gold)
write("Pt_relaxed.cif", platinum)

Dilute solution interpolation (DSI) model

Enthalpy of mixing

Import the DSIModel from blendpy and create a DSIModel object using the optimized structures:

from blendpy import DSIModel

# Create a DSIModel object
blendpy = DSIModel(alloy_components = ['Au_relaxed.cif', 'Pt_relaxed.cif'],
                   supercell = [2,2,2],
                   calculator = calc_mace)

Optimize the structures within the DSIModel object:

# Optimize the structures
blendpy.optimize(method=BFGSLineSearch, fmax=0.01, logfile=None)

Calculate the enthalpy of mixing for the AuPt alloy:

# Calculate the enthalpy of mixing
enthalpy_of_mixing = blendpy.get_enthalpy_of_mixing(npoints=101)

Plotting the enthalpy of mixing

import numpy as np
import matplotlib.pyplot as plt

fig, ax = plt.subplots(1,1, figsize=(5,5))

x = np.linspace(0, 1, 101)
ax.set_xlabel("$x$", fontsize=20)
ax.set_ylabel("$\Delta H_{mix}$ (kJ/mol)", fontsize=20)
ax.set_xlim(0,1)
ax.set_ylim(-7,7)
ax.set_xticks(np.linspace(0,1,6))
ax.set_yticks(np.arange(-6,7,2))

# Plot the data
ax.plot(x, enthalpy_of_mixing, color='#d53e4f', linewidth=3, zorder=2)
ax.scatter(x[::10], enthalpy_of_mixing[::10], color='#d53e4f', s=80, zorder=2, label="Au$_{1-x}$Pt$_{x}$")

# Reference: H. Okamoto and T.B. Massalski, Bull. Alloy Phase Diagrams 1 (1985) 46.
df_exp = pd.read_csv("data/experimental/exp_AuPt.csv")
ax.plot(df_exp['x'][::2], df_exp['enthalpy'][::2], 's', color='#000000', markersize=8, label="Exp. Data", zorder=1)
ax.legend(loc="best", fontsize=16)

ax.tick_params(direction='in', axis='both', which='major', labelsize=20, width=3, length=8)
ax.set_box_aspect(1)
for spine in ax.spines.values():
    spine.set_linewidth(3)

plt.tight_layout()
# plt.savefig("enthalpy_of_mixing.png", dpi=600, format='png', bbox_inches='tight')
plt.show()

Figure 1 - Enthalpy of mixing of the Au-Pt alloy computed using the DSI model and MACE interatomic potentials.

DSI model from pre-calculated data

Polymorphism

Phase diagram (NOT WORKING)

By analyzing the mixing enthalpies and entropies, we can calculate the Gibbs free energy of the Au–Pt alloy mixture and determine both the spinodal and binodal (solvus) decomposition curves. These curves, which form key features of the alloy's phase diagram, delineate regions of differing stability: below the binodal curve, the solid solution (Au, Pt) is metastable, whereas it becomes unstable beneath the spinodal curve.

We begin by defining a temperature range over which to calculate the spinodal and binodal curves. Optionally, the results can be saved in CSV files.

temperatures = np.arange(300, 3001, 5)

# spinodal curve
df_spinodal = blendpy.get_spinodal_decomposition(temperatures = temperatures, npoints = 501)
df_spinodal.to_csv("data/phase_diagram/spinodal_AuPt.csv", index=False, header=True, sep=',')

# binodal curve
df_binodal = blendpy.get_binodal_curve(temperatures = temperatures, npoints=501)
df_binodal.to_csv("data/phase_diagram/binodal_AuPt.csv", index=False, header=True, sep=',')

To plot the phase diagram featuring the spinodal and binodal decomposition curves, we proceed as follows:

import pandas as pd

# Create figure and axis
fig, ax = plt.subplots(1,1, figsize=(8,8))

x = np.linspace(0, 1, 101)

# Configure axis labels and limits
ax.set_xlabel("$x$", fontsize=20)
ax.set_ylabel("$T$ (K)", fontsize=20)
ax.set_xlim(0,1)
ax.set_ylim(300, 2500)
ax.set_xticks(np.linspace(0,1,6))

# Plot the data
ax.plot(df_spinodal['x'], df_spinodal['t'], color='#d53e4f', linestyle='--', linewidth=3, label="Spinodal curve")
ax.plot(df_binodal['x'], df_binodal['t'], color='#d53e4f', linewidth=3, label="Binodal curve")

# Fill below the curves with transparency (alpha=0.3 means 30% opacity)
ax.fill_between(df_spinodal['x'], df_spinodal['t'], 300, color='#d53e4f', alpha=0.3)
ax.fill_between(df_binodal['x'], df_binodal['t'], 300, color='#d53e4f', alpha=0.3)
ax.legend(loc="best", fontsize=20)

# Add text annotations
ax.text(0.2, 1500, "Stable", fontsize=20, ha='center', va='center')
ax.text(0.4, 950, "Metastable", fontsize=20, ha='center', va='center', rotation=60)
ax.text(0.7, 700, "Unstable", fontsize=20, ha='center', va='center')

# Customize tick parameters
ax.tick_params(direction='in', axis='both', which='major', labelsize=20, width=3, length=8)
ax.set_box_aspect(1)
for spine in ax.spines.values():
    spine.set_linewidth(3)

plt.tight_layout()
# plt.savefig("phase_diagram.png", dpi=600, format='png', bbox_inches='tight')
plt.show()

Figure 2 - Phase diagram of the Au–Pt alloy computed using the DSI model and MACE interatomic potentials.

License

This is an open source code under MIT License.

Acknowledgements

We thank financial support from FAPESP (Grant No. 2022/14549-3), INCT Materials Informatics (Grant No. 406447/2022-5), and CNPq (Grant No. 311324/2020-7).