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libscran

C++ libraries for single-cell analysis
README.md

C++ libraries for single-cell analysis

This organization contains bits and pieces of C++ code for single-cell analysis. Most of this was originally taken from the scran R package, with some refactoring to enable re-use outside of R.

Developers can check out the scran-cli repository to see how the various libscran components fit together. For actual analyses, users are referred to the R, Python or Javascript bindings.

Popular repositories Loading

  1. umappp umappp Public

    C++ port of the UMAP algorithm

    C++ 48 15

  2. qdtsne qdtsne Public

    Quick-and-dirty t-SNE in C++

    C++ 10 2

  3. scran.chan scran.chan Public

    A slimmed down version of scran, based on the C++ library of the same name.

    R 9

  4. scranpy scranpy Public

    Single-cell data analysis, from C++ to Python

    Python 8

  5. libscran libscran Public archive

    scran, but in C++.

    C++ 7

  6. scrapper scrapper Public

    R bindings to C++ code for single-cell analysis

    R 5

Repositories

Showing 10 of 25 repositories
  • Rigraphlib Public

    Prebuilt igraph static library for Bioconductor packages

    libscran/Rigraphlib’s past year of commit activity
    R 1 0 0 0 Updated Mar 5, 2025
  • scrapper Public

    R bindings to C++ code for single-cell analysis

    libscran/scrapper’s past year of commit activity
    R 5 0 1 0 Updated Feb 23, 2025
  • umappp Public

    C++ port of the UMAP algorithm

    libscran/umappp’s past year of commit activity
    C++ 48 BSD-2-Clause 15 7 0 Updated Feb 18, 2025
  • qdtsne Public

    Quick-and-dirty t-SNE in C++

    libscran/qdtsne’s past year of commit activity
    C++ 10 MIT 2 1 0 Updated Feb 18, 2025
  • scran_qc Public

    Compute simple quality control metrics for each cell

    libscran/scran_qc’s past year of commit activity
    C++ 0 MIT 0 1 0 Updated Feb 15, 2025
  • scran_pca Public

    Various flavors of principal components analysis

    libscran/scran_pca’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Feb 13, 2025
  • scran_markers Public

    Marker detection from single-cell expression data

    libscran/scran_markers’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Feb 11, 2025
  • scran_aggregate Public

    Aggregate expression values across groups of cells

    libscran/scran_aggregate’s past year of commit activity
    C++ 1 MIT 0 1 0 Updated Feb 10, 2025
  • scran_variances Public

    Model per-gene variances in log-expression data

    libscran/scran_variances’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Jan 13, 2025
  • scran_tests Public

    Test utilities for libscran

    libscran/scran_tests’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Jan 9, 2025
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Top languages

C++ R Python

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