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add layer_type to map metadata
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@zzeppozz
zzeppozz committed Apr 26, 2021
1 parent db1d46d commit 349d398
Showing 1 changed file with 4 additions and 135 deletions.
139 changes: 4 additions & 135 deletions lmtrex/tools/provider/lifemapper.py
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Original file line number Diff line number Diff line change
Expand Up @@ -92,7 +92,8 @@ def _standardize_proj_layer_record(cls, rec, prjscenariocodes=None, color=None):
'Failed to get speciesName element'))
newrec = {
'endpoint': endpoint,
'sdm_layer_name': sdm_layer_name,
'layer_type': 'raster',
'layer_name': sdm_layer_name,
'sdm_projection_link': proj_url,
'sdm_projection_scenario_code': scen_code,
'sdm_projection_scenario_link': scen_link,
Expand Down Expand Up @@ -153,7 +154,8 @@ def _standardize_occ_layer_record(cls, rec, color=None):
newrec = {
'endpoint': endpoint,
'point_link': point_url,
'point_layer_name': point_layer_name,
'layer_type': 'vector',
'layer_name': point_layer_name,
'point_count': ptcount,
'point_bbox': bbox,
'species_name': species_name,
Expand Down Expand Up @@ -233,139 +235,6 @@ def _standardize_occ_output(cls, output, color=None, count_only=False, err=None)
provider_query=None, query_term=None, service=None)

return std_output
# # ...............................................
# @classmethod
# def _construct_map_url(
# cls, rec, bbox, color, exceptions, height, layers, frmat, request,
# srs, transparent, width):
# """
# service=wms&request=getmap&version=1.0&srs=epsg:4326&bbox=-180,-90,180,90&format=png&width=600&height=300&layers=prj_1848399
# """
# try:
# mapname = rec['map']['mapName']
# lyrname = rec['map']['layerName']
# url = rec['map']['endpoint']
# except Exception as e:
# msg = 'Failed to retrieve map data from {}, {}'.format(rec, e)
# rec = {'spcoco.error': msg}
# else:
# tmp = layers.split(',')
# lyrcodes = [t.strip() for t in tmp]
# lyrnames = []
# # construct layers for display from bottom layer up to top:
# # bmng (background image), prj (projection), occ (points)
# if 'bmng' in lyrcodes:
# lyrnames.append('bmng')
# if 'prj' in lyrcodes:
# lyrnames.append(lyrname)
# if 'occ' in lyrcodes:
# try:
# occid = rec['occurrenceSet']['id']
# except:
# msg = 'Failed to retrieve occurrence layername'
# else:
# occlyrname = 'occ_{}'.format(occid)
# lyrnames.append(occlyrname)
# lyrstr = ','.join(lyrnames)
#
# filters = {
# 'bbox': bbox, 'height': height, 'layers': lyrstr,
# 'format': frmat, 'request': request, 'srs': srs, 'width': width}
# # Optional, LM-specific, filters
# # TODO: fix color parameter in Lifemapper maps
# # if color is not None:
# # filters['color'] = color
# if exceptions is not None:
# filters['exceptions'] = exceptions
# if transparent is not None:
# filters['transparent'] = transparent
#
# filter_str = 'service=wms&version=1.0'
# for (key, val) in filters.items():
# filter_str = '{}&{}={}'.format(filter_str, key, val)
# map_url = '{}/{}?{}'.format(url, mapname, filter_str)
# return map_url
#
# # ...............................................
# @classmethod
# def find_projections_by_name(
# cls, name, prjscenariocode=None, bbox='-180,-90,180,90',
# color=None, exceptions=None, height=300, layers='prj', frmat='png',
# request='getmap', srs='epsg:4326', transparent=None, width=600,
# other_filters={}, logger=None):
# """
# List projections for a given scientific name.
#
# Args:
# name: a scientific name 'Accepted' according to the GBIF Backbone
# Taxonomy
# prjscenariocode: a Lifemapper code indicating whether the
# environmental data used for creating the projection is
# observed, or modeled past or future. Codes are in
# LmREx.common.lmconstants Lifemapper.*_SCENARIO_CODE*. If the
# code is None, return a map with only occurrence points
# logger: optional logger for info and error messages. If None,
# prints to stdout
#
# Note:
# Lifemapper contains only 'Accepted' name froms the GBIF Backbone
# Taxonomy and this method requires them for success.
#
# Todo:
# handle full record returns instead of atoms
# """
# output = {}
# recs = []
# other_filters[Lifemapper.NAME_KEY] = name
# other_filters[Lifemapper.ATOM_KEY] = 0
# # other_filters[Lifemapper.MIN_STAT_KEY] = Lifemapper.COMPLETE_STAT_VAL
# # other_filters[Lifemapper.MAX_STAT_KEY] = Lifemapper.COMPLETE_STAT_VAL
# if prjscenariocode is not None:
# other_filters[Lifemapper.SCENARIO_KEY] = prjscenariocode
# api = LifemapperAPI(
# resource=Lifemapper.PROJ_RESOURCE, other_filters=other_filters)
# try:
# api.query_by_get()
# except Exception:
# msg = 'Failed on {}'.format(api.url)
# log_error(msg, logger=logger)
# output[S2nKey.ERRORS_KEY] = msg
# else:
# # output returns a list of records
# recs = api.output
# if len(recs) == 0:
# output['warning'] = 'Failed to find projections for {}'.format(
# name)
# background_layer_name = 'bmng'
# for rec in recs:
# # Add base WMS map url with LM-specific parameters into
# # map section of metadata
# try:
# rec['map']['lmMapEndpoint'] = '{}/{}?layers={}'.format(
# rec['map']['endpoint'], rec['map']['mapName'],
# rec['map']['layerName'])
# except Exception as err:
# msg = 'Failed getting map url components {}'.format(err)
# log_error(msg, logger=logger)
# output[S2nKey.ERRORS_KEY] = msg
# else:
# # Add background layername into map section of metadata
# rec['map']['backgroundLayerName'] = background_layer_name
# # Add point layername into map section of metadata
# try:
# occ_layer_name = 'occ_{}'.format(rec['occurrenceSet']['id'])
# except:
# occ_layer_name = ''
# rec['map']['pointLayerName'] = occ_layer_name
# # Add full WMS map url with all required parameters into metadata
# url = LifemapperAPI._construct_map_url(
# rec, bbox, color, exceptions, height, layers, frmat,
# request, srs, transparent, width)
# if url is not None:
# rec['map_url'] = url
# output[S2nKey.COUNT_KEY] = len(recs)
# output[S2nKey.RECORDS_KEY] = recs
# return output

# ...............................................
@classmethod
Expand Down

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