update docs

lilab-bcb · Jun 19, 2024 · 35c049c · 35c049c
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diff --git a/docs/cellranger/sc_multiomics.rst b/docs/cellranger/sc_multiomics.rst
@@ -155,9 +155,9 @@ For single-cell multiomics data, ``cellranger_workflow`` takes Illumina outputs
 	  - "8.0.1"
 	  - "8.0.1"
 	* - cellranger_arc_version
-	  - cellranger-arc version, could be 2.0.2, 2.0.1, 2.0.0, 1.0.1, 1.0.0
-	  - "2.0.2"
-	  - "2.0.2"
+	  - cellranger-arc version, could be: ``2.0.2.strato`` (compatible with workflow v2.6.1+), ``2.0.2.custom-max-cell`` (with max_cell threshold set to 80,000), ``2.0.2`` (compatible with workflow v2.6.0 or earlier), ``2.0.1``, ``2.0.0``, ``1.0.1``, ``1.0.0``
+	  - "2.0.2.strato"
+	  - "2.0.2.strato"
 	* - docker_registry
 	  - Docker registry to use for cellranger_workflow. Options:
 

diff --git a/docs/conf.py b/docs/conf.py
@@ -26,7 +26,7 @@
 # The short X.Y version
 version = '2.6'
 # The full version, including alpha/beta/rc tags
-release = '2.6.1'
+release = '2.6.2'
 
 
 # -- General configuration ---------------------------------------------------

diff --git a/docs/release_notes/version_2_6.rst b/docs/release_notes/version_2_6.rst
@@ -1,3 +1,8 @@
+2.6.2 :small:`June 19, 2024`
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+* Solve the issue of Cellranger workflow with cellranger-arc. ``cellranger_arc_version`` default is now "2.0.2.strato" which is compatible with workflow v2.6.1 or later.
+
 2.6.1 :small:`May 8, 2024`
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^