Travis2githubactions #7
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| name: Tests | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| permissions: | |
| contents: read | |
| pull-requests: read | |
| # This allows a subsequently queued workflow run to interrupt previous runs | |
| concurrency: | |
| group: '${{ github.workflow }} @ ${{ github.event.pull_request.head.label || github.head_ref || github.ref }}' | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y conda | |
| conda create -n test-env python=${{ matrix.python-version }} -y | |
| conda activate test-env | |
| conda install -c bioconda -c conda-forge pip pytest fastspar>=0.0.7 armadillo=8 "scipy<=1.10.1,>=1.8.0" numpy networkx biom-format pandas scikit-bio statsmodels h5py | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| python setup.py install | |
| - name: Test with pytest | |
| run: | | |
| python -m pytest tests/ |