Travis2githubactions #16

	name: Tests

	on:
	workflow_dispatch:
	push:
	branches:
	- main
	pull_request:

	permissions:
	contents: read
	pull-requests: read

	# This allows a subsequently queued workflow run to interrupt previous runs
	concurrency:
	group: '${{ github.workflow }} @ ${{ github.event.pull_request.head.label \|\| github.head_ref \|\| github.ref }}'
	cancel-in-progress: true

	jobs:
	build:

	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.8", "3.9", "3.10"]
	# Set it to default use bash in interactive mode (required for miniconda setup)
	defaults:
	run:
	shell: bash -el {0}
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	- name: create environment with mamba
	uses: conda-incubator/setup-miniconda@v2
	with:
	mamba-version: "*"
	python-version: ${{ matrix.python-version }}
	channels: conda-forge,bioconda,defaults
	auto-activate-base: false
	environment-file: environment.yml
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install pytest
	if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
	python setup.py install

	- name: Test with pytest
	run: \|
	python -m pytest tests/

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