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fix: use tidy description
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m-jahn committed Apr 24, 2024
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74 changes: 37 additions & 37 deletions DESCRIPTION
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Package: ggcoverage
Type: Package
Package: ggcoverage
Title: Visualize Genome/Protein Coverage with Various Annotations
Version: 1.3.0
Authors@R: c(
person(given = "Yabing",
family = "Song",
role = c("aut", "cre"),
email = "[email protected]"),
person(given = "Michael",
family = "Jahn",
email = "[email protected]",
role = "aut",
person("Yabing", "Song", , "[email protected]", role = c("aut", "cre", "cph")),
person("Michael", "Jahn", , "[email protected]", role = c("aut", "cph"),
comment = c(ORCID = "0000-0002-3913-153X"))
)
Maintainer: Yabing Song <[email protected]>
Description: The goal of 'ggcoverage' is to simplify the process of visualizing genome/protein coverage. It contains functions to
load data from BAM, BigWig, BedGraph or txt/xlsx files, create genome/protein coverage plot, add various annotations to
the coverage plot, including base and amino acid annotation, GC annotation, gene annotation, transcript annotation, ideogram annotation,
peak annotation, contact map annotation, link annotation and peotein feature annotation.
Description: The goal of 'ggcoverage' is to simplify the process of
visualizing genome/protein coverage. It contains functions to load
data from BAM, BigWig, BedGraph or txt/xlsx files, create
genome/protein coverage plots, add various annotations to the coverage
plot, including base and amino acid annotation, GC annotation, gene
annotation, transcript annotation, ideogram annotation, peak
annotation, contact map annotation, link annotation and protein
feature annotation.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.1
URL: https://showteeth.github.io/ggcoverage/, https://github.com/showteeth/ggcoverage
URL: https://showteeth.github.io/ggcoverage/,
https://github.com/showteeth/ggcoverage
BugReports: https://github.com/showteeth/ggcoverage/issues
biocViews:
Imports:
BiocParallel,
Biostrings,
BSgenome,
dplyr,
GenomeInfoDb,
GenomicAlignments,
GenomicRanges,
ggbio,
ggforce,
ggh4x,
ggpattern,
ggplot2,
ggrepel,
grDevices,
gridExtra,
HiCBricks,
IRanges,
magrittr,
methods,
openxlsx,
patchwork,
RColorBrewer,
reshape2,
rlang,
Rsamtools,
rtracklayer,
scales,
stats,
utils,
methods,
GenomeInfoDb,
S4Vectors,
Biostrings,
BSgenome,
GenomicAlignments,
reshape2,
scales,
seqinr,
ggforce,
HiCBricks,
ggpattern,
BiocParallel,
openxlsx,
stats,
stringr,
gridExtra
utils
Suggests:
rmarkdown,
knitr,
BiocStyle,
htmltools,
BSgenome.Hsapiens.UCSC.hg19,
graphics,
HiCDataHumanIMR90
VignetteBuilder: knitr
HiCDataHumanIMR90,
htmltools,
knitr,
rmarkdown
VignetteBuilder:
knitr
biocViews:
Encoding: UTF-8
RoxygenNote: 7.3.1

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