Merge pull request #122 from mach3-software/feature_MinorFixes

Changes to CI after I change valaitions into tutorial

.github/dependabot.yml

@@ -9,3 +9,9 @@ updates:
     directory: ".github/workflows/" # Location of the GitHub Actions workflow files
     schedule:
       interval: "weekly" # Check for updates on a weekly basis
+
+  # Update Python dependencies
+  - package-ecosystem: "pip"
+    directory: "/"  # Location of your requirements.txt file
+    schedule:
+      interval: "weekly"

.github/workflows/CIValidations.yml

@@ -34,7 +34,7 @@ jobs:
     - name: Get MaCh3 Validations
       run: |
         cd /opt/
-        git clone https://github.com/mach3-software/MaCh3Validations.git MaCh3Validations
+        git clone https://github.com/mach3-software/MaCh3Tutorial.git MaCh3Validations
         cd MaCh3Validations
         mkdir build
         cd build

.github/workflows/TagTutorial.yml

@@ -16,19 +16,19 @@ jobs:
           git config --global user.name "MaCh3 Bot"
           git config --global user.email "[email protected]"
 
-      - name: Clone MaCh3Validations
+      - name: Clone MaCh3Tutorial
         run: |
-          git clone https://${{ secrets.MACH3_VALIDATIONS_PAT }}@github.com/mach3-software/MaCh3Validations.git
+          git clone https://${{ secrets.MACH3_VALIDATIONS_PAT }}@github.com/mach3-software/MaCh3Tutorial.git
 
       - name: Create and push the new tag
         run: |
-          cd MaCh3Validations/
+          cd MaCh3Tutorial/
 
           # Extract the tag name from GITHUB_REF
           TAG_NAME=$(echo "${GITHUB_REF#refs/tags/}")
 
           # Create the new tag
           git tag $TAG_NAME
 
-          # Push the tag to the MaCh3Validations repository
-          git push https://${{ secrets.MACH3_VALIDATIONS_PAT }}@github.com/mach3-software/MaCh3Validations.git $TAG_NAME
+          # Push the tag to the MaCh3Tutorial repository
+          git push https://${{ secrets.MACH3_VALIDATIONS_PAT }}@github.com/mach3-software/MaCh3Tutorial.git $TAG_NAME

CMakeLists.txt

@@ -5,7 +5,7 @@ cmake_minimum_required(VERSION 3.14 FATAL_ERROR)
 
 #KS: Enable language, necessary when using CUDA
 enable_language(CXX)
-set(MaCh3_VERSION 1.1.3)
+set(MaCh3_VERSION 1.1.4)
 
 # Try to find CUDA
 find_package(CUDAToolkit QUIET)

Doc/Doxyfile

@@ -38,7 +38,7 @@ PROJECT_NAME           = "MaCh3"
 # could be handy for archiving the generated documentation or if some version
 # control system is used.
 
-PROJECT_NUMBER         = 1.1.3
+PROJECT_NUMBER         = 1.1.4
 
 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewer a

covariance/covarianceOsc.cpp

@@ -19,13 +19,18 @@ covarianceOsc::covarianceOsc(const std::vector<std::string>& YAMLFile, const cha
     if(_fNames[io] == "sin2th_23") kSinTheta23 = io;
     if(_fNames[io] == "baseline") kBaseline = io;
     if(_fNames[io] == "density") kDensity = io;
+
+    // Set covarianceBase parameters (Curr = current, Prop = proposed, Sigma = step)
+    _fCurrVal[io] = _fPreFitValue[io];
+    _fPropVal[io] = _fCurrVal[io];
   }
 
   /// WARNING HARDCODED
   MACH3LOG_CRITICAL("Fixing baseline and density, it is hardcoded sry");
   toggleFixParameter("baseline");
   toggleFixParameter("density");
 
+  /// @todo KS: Technically if we would like to use PCA we have ot initialise parts here...
   flipdelM = false;
 
   randomize();