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dvir 3.2.1
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@magnusdv magnusdv released this 16 Oct 05:38
v3.2.1
2d1e506

New features

  • Add file dvi-example.fam as a system file. Hence avoid internet download during example (gave CRAN error).
  • New function dviSolve() implementing a complete pipeline for solving a DVI case.
  • New function amDrivenDVI() implementing AM-driven analysis.
  • New functions setPairing() and excludePairing() for manually fixing or disallowing certain pairings.
  • In findUndisputed() replace argument relax with its negation strict, and reverse the default to be strict = FALSE.
  • Harmonise the output summaries of the main functions.
  • New function dviSim() for simulating marker data onto a DVI dataset.
  • New function findNonidentifiable().
  • Export (experimental) checkDVI().
  • mergePM() gains argument verbose.

Other

  • Enforce family names in consolidateDVI().
  • Reorganise and synchronise code in findExcluded() and exclusionMatrix().
  • Use cat() instead of message() throughout.
  • Remove deprecated summariseDVI() (replaced by print.dviData()).

Bug fixes

  • findUndisputed() miscounted steps if verbose = F.
  • jointDVI() sometimes dropped victims after findUndisputed().
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