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Trying to keep the bot happy #506

Trying to keep the bot happy

Trying to keep the bot happy #506

Workflow file for this run

name: GitHub CI
on: [push, pull_request]
concurrency:
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref || github.run_id }}
cancel-in-progress: true
jobs:
build:
name: On ${{ matrix.os }} with (${{ matrix.compiler }}, python-${{ matrix.python-version }}, numpy-${{ matrix.numpy-version }})
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: ["ubuntu-20.04", "ubuntu-latest", "macos-latest"]
compiler: [gcc-7, gcc-9, clang]
python-version: ["3.9", "3.12"]
numpy-version: ["1.20", "2.0.1"]
include:
- numpy-version: "1.23"
compiler: gcc-10
python-version: "3.10"
os: ubuntu-latest
- numpy-version: "1.23"
compiler: gcc-11
python-version: "3.10"
os: ubuntu-latest
- numpy-version: "1.23"
compiler: gcc-10
python-version: "3.10"
os: ubuntu-latest
- numpy-version: "1.23"
compiler: gcc-11
python-version: "3.10"
os: ubuntu-latest
- numpy-version: "1.23"
compiler: gcc-10
python-version: "3.11"
os: ubuntu-latest
- numpy-version: "1.23"
compiler: gcc-11
python-version: "3.11"
os: ubuntu-latest
- numpy-version: "1.23"
compiler: gcc-12
python-version: "3.11"
os: ubuntu-latest
- numpy-version: "1.23"
compiler: gcc-10
python-version: "3.11"
os: ubuntu-latest
- numpy-version: "1.23"
compiler: gcc-11
python-version: "3.11"
os: ubuntu-latest
- numpy-version: "1.23"
compiler: gcc-12
python-version: "3.11"
os: ubuntu-latest
exclude:
# Only run with 'clang' on OSX
- os: "macos-latest"
compiler: gcc-7
- os: "macos-latest"
compiler: gcc-9
# Don't use 'clang' on linux
- os: "ubuntu-20.04"
compiler: clang
- os: "ubuntu-latest"
compiler: clang
# only gcc-10 on latest
- os: "ubuntu-latest"
compiler: gcc-9
- os: "ubuntu-latest"
compiler: gcc-7
# Only use latest numpy on ubuntu-latest
- os: "ubuntu-latest"
numpy-version: 1.20
# python3.10 only on ubuntu-latest
# - os: "ubuntu-20.04"
# python-version: "3.10"
# - os: "macos-latest"
# python-version: "3.10"
- python-version: "3.9"
numpy-version: "2.0.1"
- python-version: "3.12"
numpy-version: "1.20"
env:
CC: ${{ matrix.compiler }}
CORRFUNC_CI: true
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Setup Miniconda
uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: true
auto-activate-base: false
miniconda-version: 'latest'
python-version: ${{ matrix.python-version }}
# This was needed on 18.04 but not on 20.04
# - name: Install binutils on linux
# shell: bash -l {0}
# if: matrix.os == 'ubuntu-18.04'
# run: |
# sudo apt-get update
# sudo apt-get install binutils
- name: Install gcc-7 on ubuntu-20.04
shell: bash -l {0}
if: matrix.os == 'ubuntu-20.04'
run: |
sudo add-apt-repository ppa:ubuntu-toolchain-r/test
sudo apt-get update
sudo apt-get install gcc-7
- name: Install dependencies
shell: bash -l {0}
run: |
conda create -q --yes -n test python=${{ matrix.python-version }} nomkl
conda activate test
conda install -q --yes -c conda-forge numpy=${{ matrix.numpy-version }} gsl
- name: Display PATH, compiler, python
shell: bash -l {0}
run: |
conda activate test
echo "PATH = " $PATH
echo "COMPILER = " `which ${{ matrix.compiler }}`
echo "COMPILER VERSION = " `${{ matrix.compiler }} --version`
echo "PYTHON = " `which python`
echo "(PYTHON, NUMPY) version = " `python -c "import sys; import numpy as np; print(sys.version); print(np.__version__);"`
echo "Preprocessor defs:"
echo `${{ matrix.compiler }} -dM -E - -march=native`
- name: lscpu on Linux
if: matrix.os != 'macos-latest'
run: |
lscpu
- name: sysctl machdep.cpu on OSX
if: matrix.os == 'macos-latest'
run: |
sysctl machdep.cpu
# - name: Add linker flag to OSX + gcc
# shell: bash -l {0}
# if: matrix.os == 'osx-latest' && startswith(matrix.compiler, 'gcc')
# run: export CLINK = '-lgomp'
- name: compile
shell: bash -l {0}
run: make -r CC=${{ matrix.compiler }}
- name: install
shell: bash -l {0}
run: make install CC=${{ matrix.compiler }}
- name: compile and install python extensions
shell: bash -l {0}
run: |
echo "CC = " $CC
export CC=${{ matrix.compiler }}
python -m pip install -e .
- name: tests
shell: bash -l {0}
run: make tests CC=${{ matrix.compiler }}
- name: doctests
shell: bash -l {0}
if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.10' && matrix.numpy-version == '1.16'
run: |
python -m pip install 'sphinx>=1.8'
make -C docs doctest
- name: Python tests
shell: bash -l {0}
run: |
python -m pip install pytest
python -m pytest -v