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Created EP system code for Ensembl Plants database. NB: this is in li…
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…ne with MIRIAM registry, unlike the EnXx codes

git-svn-id: http://svn.bigcat.unimaas.nl/bridgedb/trunk@659 e3f1d335-44b1-4163-9530-9b341189ae98
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martijn committed Nov 16, 2012
1 parent e782bee commit fb938d3
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4 changes: 2 additions & 2 deletions org.bridgedb.bio/resources/org/bridgedb/bio/datasources.txt
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Expand Up @@ -121,8 +121,8 @@ Ensembl Metazoa http://metazoa.ensembl.org/ http://metazoa.ensembl.org/id/$id F
Ensembl Mosquito EnAg http://www.ensembl.org http://www.ensembl.org/Anopheles_gambiae/Gene/Summary?_q=$id AGAP006864 gene Anopheles gambiae 1 EnAg AGAP\d{6}
Ensembl Mouse EnMm http://www.ensembl.org http://www.ensembl.org/Mus_musculus/Gene/Summary?g=$id ENSMUSG00000017167 gene Mus musculus 1 EnMm ENSMUSG\d{11}
Ensembl Pig EnSs http://www.ensembl.org http://www.ensembl.org/Sus_scrofa/Gene/Summary?g=$id ENSSSCG00000004244 gene Sus scrofa 1 EnSs
Ensembl Plants http://plants.ensembl.org/ http://plants.ensembl.org/id/$id AT1G73965 1 urn:miriam:ensembl.plant ^\w+$ Ensembl Plants
Ensembl Protists http://protists.ensembl.org http://protists.ensembl.org/id/$id PFC0120w 1 urn:miriam:ensembl.protist ^\w+$ Ensembl Protists
Ensembl Plants EP http://plants.ensembl.org/ http://plants.ensembl.org/id/$id AT1G73965 gene 1 urn:miriam:ensembl.plant ^\w+$ Ensembl Plants
Ensembl Protists http://protists.ensembl.org http://protists.ensembl.org/id/$id PFC0120w gene 1 urn:miriam:ensembl.protist ^\w+$ Ensembl Protists
Ensembl Rat EnRn http://www.ensembl.org http://www.ensembl.org/Rattus_norvegicus/Gene/Summary?g=$id ENSRNOG00000016648 gene Rattus norvegicus 1 EnRn ENSRNOG\d{11}
Ensembl Xenopus EnXt http://www.ensembl.org http://www.ensembl.org/Xenopus_tropicalis/Gene/Summary?g=$id ENSXETG00000029448 gene Xenopus tropicalis 1 EnXt ENSXETG\d{11}
Ensembl Yeast EnSc http://www.ensembl.org http://www.ensembl.org/Saccharomyces_cerevisiae/Gene/Summary?g=$id YGR147C gene Saccharomyces cerevisiae 1 EnSc Y[A-Z][RL]\d{3}[WC](?:\-[A-Z])?
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2 changes: 2 additions & 0 deletions org.bridgedb.bio/src/org/bridgedb/bio/BioDataSource.java
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Expand Up @@ -136,6 +136,8 @@ public class BioDataSource
/** @deprecated use ENSEMBL instead */
public static final DataSource ENSEMBL_XENOPUS = DataSource.register (
"EnXt", "Ensembl Xenopus").asDataSource();
public static final DataSource ENSEMBL_PLANTS = DataSource.register (
"EP", "Ensembl Plants").asDataSource();
public static final DataSource FLYBASE = DataSource.register (
"F", "FlyBase").asDataSource();
public static final DataSource GENBANK = DataSource.register (
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