set echo=TRUE for gene plot and corrected some base-R code #39
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| name: render | |
| on: | |
| pull_request: | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| deploy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| - uses: mamba-org/setup-micromamba@main | |
| with: | |
| environment-file: configs/conda.yml | |
| cache-downloads: true | |
| environment-name: Rdeseq2 | |
| - name: activate_env | |
| run: | | |
| micromamba activate Rdeseq2 | |
| - name: render site | |
| run: | | |
| Rscript -e "rmarkdown::render_site('rmd/')" |