Release_1.2.3
- Updated citation for snakePipes
- Fixed replicate check for samples with trailing spaces in names
- Fixed input filtering in CSAW
- Several allele-specific RNAseq fixes
- ATACseq peakQC is now run on fragment-size filtered bam
- Fixed Salmon output (Number of Reads output in "*counts.tsv" files and file naming)
- Fixed CSAW QC plot error with single end reads
- Updated histone HMM environment to a working conda version
- Salmon_wasabi is now a localrule