reknitted documents

also did a quick spellcheck
mayoverse · May 31, 2024 · 7ec7cf0 · 7ec7cf0
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diff --git a/R/alignped1.R b/R/alignped1.R
@@ -2,7 +2,7 @@
 
 # TODO add params and example
 
-#' First routine alignement
+#' First routine alignment
 #'
 #' @description
 #' This is the first of the four co-routines.

diff --git a/R/alignped2.R b/R/alignped2.R
@@ -2,7 +2,7 @@
 
 # TODO add params and example
 
-#' Second routine alignement
+#' Second routine alignment
 #'
 #' @description
 #' This is the second of the four co-routines.

diff --git a/R/alignped3.R b/R/alignped3.R
@@ -2,7 +2,7 @@
 
 # TODO add params and example and return
 
-#' Third routine alignement
+#' Third routine alignment
 #'
 #' @description
 #' This is the third of the four co-routines.

diff --git a/R/besthint.R b/R/besthint.R
@@ -1,6 +1,6 @@
 # TODO add param, return, examples, keywords, seealso
 
-#' Best hint for alignement
+#' Best hint for alignment
 #'
 #' @description
 #' When computer time is cheap, use this routine to get a "best" pedigree.

diff --git a/R/pedigree.shrink.R b/R/pedigree.shrink.R
@@ -33,8 +33,8 @@
 #' @examples
 #' data(sample.ped)
 #' pedAll <- with(sample.ped, pedigree(id, father, mother, sex,
-#'   affected = cbind(affected, avail), famid = ped
-#' ))
+#'   affected = cbind(affected, avail), famid = ped))
+#'
 #' ped1 <- pedAll["1"]
 #' ped1trim <- pedigree.shrink(ped1, maxBits = 12)
 #'

diff --git a/man/alignped1.Rd b/man/alignped1.Rd
diff --git a/man/alignped2.Rd b/man/alignped2.Rd
diff --git a/man/alignped3.Rd b/man/alignped3.Rd
diff --git a/man/alignped4.Rd b/man/alignped4.Rd
diff --git a/man/as.data.frame.pedigree.Rd b/man/as.data.frame.pedigree.Rd
diff --git a/man/besthint.Rd b/man/besthint.Rd
diff --git a/man/fixParents.Rd b/man/fixParents.Rd
diff --git a/man/kinship2.Rd b/man/kinship2.Rd
diff --git a/man/legendPlot.Rd b/man/legendPlot.Rd
diff --git a/man/ped2df.Rd b/man/ped2df.Rd
diff --git a/man/pedigree.Rd b/man/pedigree.Rd
diff --git a/man/pedigree.legend.Rd b/man/pedigree.legend.Rd
diff --git a/man/pedigree.shrink.Rd b/man/pedigree.shrink.Rd