chore(main): release 0.7.1 (#58) #156
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| name: Python CI | |
| on: [ push, pull_request ] | |
| env: | |
| TERM: screen-256color | |
| jobs: | |
| cog_check_job: | |
| runs-on: ubuntu-latest | |
| name: check conventional commit compliance | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| # pick the pr HEAD instead of the merge commitonly if it's a PR, otherwise use the default | |
| ref: ${{ github.event.pull_request.head.sha || github.sha }} | |
| - name: Conventional commit check | |
| uses: cocogitto/cocogitto-action@v3 | |
| with: | |
| check-latest-tag-only: true | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: [ 3.8 ] | |
| os: [ ubuntu-latest, macos-latest ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| miniforge-variant: Mambaforge | |
| channels: conda-forge,bioconda,defaults | |
| channel-priority: strict | |
| activate-environment: tbpore | |
| environment-file: environment.yaml | |
| auto-update-conda: true | |
| - name: Install project | |
| shell: bash -l {0} | |
| run: | | |
| mamba install python=${{ matrix.python-version }} | |
| just install | |
| - name: Check formatting | |
| shell: bash -l {0} | |
| run: just check-fmt | |
| - name: Lint | |
| shell: bash -l {0} | |
| run: just lint | |
| - name: Test and generate coverage report with pytest | |
| shell: bash -l {0} | |
| run: just test-ci | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| fail_ci_if_error: false | |
| token: ${{ secrets.CODECOV_TOKEN }} |