Merge pull request #54 from medizininformatik-initiative/search-param…

…-test

[WIP] Add Test for Search Params

.github/workflows/main.yml

@@ -46,3 +46,28 @@ jobs:
 
           # The Coding provided (http://fhir.de/CodeSystem/bfarm/icd-10-gm#XX.X) is not in the value set http://fhir.de/ValueSet/bfarm/icd-10-gm, and a code is required from this value set.
           EXPECTED_FAILS: VALIDATION_CONFORMANCE_DOTNET VALIDATION_CONFORMANCE_JAVA VALIDATION_EXAMPLES_JAVA
+
+  CI_SEARCH_PARAM_TEST:
+    # The type of runner that the job will run on
+    runs-on: ubuntu-latest
+
+    # Steps represent a sequence of tasks that will be executed as part of the job
+    steps:
+
+    - name: Checkout code
+      uses: actions/checkout@v2
+
+    - name: Create Search Param Bundle
+      run: .github/workflows/search-param-test/create-search-param-bundle.sh
+
+    - name: Run Blaze
+      run: docker-compose -f .github/workflows/search-param-test/blaze.yml up -d
+
+    - name: Wait for Blaze
+      run: .github/workflows/search-param-test/wait-for-url.sh http://localhost:8080/health
+
+    - name: Load Data
+      run: .github/workflows/search-param-test/load-data.sh
+
+    - name: Test Search
+      run: .github/workflows/search-param-test/test-search.sh

.github/workflows/search-param-test/.gitignore

@@ -0,0 +1 @@
+search-params.json

.github/workflows/search-param-test/blaze.yml

@@ -0,0 +1,13 @@
+services:
+  blaze:
+    image: "samply/blaze:0.25"
+    environment:
+      DB_SEARCH_PARAM_BUNDLE: "/app/search-params.json"
+      ENFORCE_REFERENTIAL_INTEGRITY: "false"
+    ports:
+    - "8080:8080"
+    volumes:
+    - "./search-params.json:/app/search-params.json:ro"
+    - "blaze-data:/app/data"
+volumes:
+  blaze-data:

.github/workflows/search-param-test/create-search-param-bundle.sh

@@ -0,0 +1,14 @@
+#!/bin/bash -e
+
+SCRIPT_DIR="$(dirname "$(readlink -f "$0")")"
+
+cat "$SCRIPT_DIR"/../../../fsh-generated/resources/SearchParameter-*.json |\
+jq -n '{
+  "resourceType": "Bundle",
+  "type": "collection",
+  "entry": [
+    inputs | {
+      "resource": .
+    }
+  ]
+}' > "$SCRIPT_DIR/search-params.json"

.github/workflows/search-param-test/load-data.sh

@@ -0,0 +1,8 @@
+#!/bin/bash -e
+
+SCRIPT_DIR="$(dirname "$(readlink -f "$0")")"
+BASE="http://localhost:8080/fhir"
+
+for f in "$SCRIPT_DIR"/../../../fsh-generated/resources/Condition-*.json; do
+  curl -sH 'Content-Type: application/fhir+json' -d @"$f" "$BASE/Condition"
+done

.github/workflows/search-param-test/test-search.sh

@@ -0,0 +1,43 @@
+#!/bin/bash -e
+
+test() {
+  if [ "$2" = "$3" ]; then
+    echo "OK 👍: the $1 is $3"
+  else
+    echo "Fail 😞: the $1 is $2, expected $3"
+    exit 1
+  fi
+}
+
+BASE="http://localhost:8080/fhir"
+
+search() {
+  curl -sH 'Prefer: handling=strict' "$BASE/Condition?$1&_summary=count" | jq .total
+}
+
+A54_4="http://fhir.de/CodeSystem/bfarm/icd-10-gm|A54.4"
+M73_04="http://fhir.de/CodeSystem/bfarm/icd-10-gm|M73.04"
+A="https://fhir.kbv.de/CodeSystem/KBV_CS_SFHIR_ICD_DIAGNOSESICHERHEIT|A"
+G="https://fhir.kbv.de/CodeSystem/KBV_CS_SFHIR_ICD_DIAGNOSESICHERHEIT|G"
+L="https://fhir.kbv.de/CodeSystem/KBV_CS_SFHIR_ICD_SEITENLOKALISATION|L"
+R="https://fhir.kbv.de/CodeSystem/KBV_CS_SFHIR_ICD_SEITENLOKALISATION|R"
+M="http://fhir.de/CodeSystem/icd-10-gm-mehrfachcodierungs-kennzeichen|*"
+E="http://fhir.de/CodeSystem/icd-10-gm-mehrfachcodierungs-kennzeichen|†"
+
+# Suchparameter: code (zu Vergleichszwecken)
+test "A54.4 count" "$(search "code=$A54_4")" "1"
+test "M73.04 count" "$(search "code=$M73_04")" "1"
+
+# Suchparameter: icd10gm-diagnosesicherheit
+test "A54.4/A count" "$(search "code=$A54_4&icd10gm-diagnosesicherheit=$A")" "0"
+test "A54.4/G count" "$(search "code=$A54_4&icd10gm-diagnosesicherheit=$G")" "1"
+
+# Suchparameter: icd10gm-seitenlokalisation
+test "A54.4/L count" "$(search "code=$A54_4&icd10gm-seitenlokalisation=$L")" "1"
+test "A54.4/R count" "$(search "code=$A54_4&icd10gm-seitenlokalisation=$R")" "0"
+
+# Suchparameter: icd10gm-mehrfachcodierung
+test "A54.4/M count" "$(search "code=$A54_4&icd10gm-mehrfachcodierung=$M")" "0"
+test "A54.4/E count" "$(search "code=$A54_4&icd10gm-mehrfachcodierung=$E")" "1"
+test "M73.04/M count" "$(search "code=$M73_04&icd10gm-mehrfachcodierung=$M")" "1"
+test "M73.04/E count" "$(search "code=$M73_04&icd10gm-mehrfachcodierung=$E")" "0"

.github/workflows/search-param-test/wait-for-url.sh

@@ -0,0 +1,14 @@
+#!/bin/bash -e
+
+URL=$1
+START_EPOCH="$(date +"%s")"
+
+eclipsed() {
+  EPOCH="$(date +"%s")"
+  echo $((EPOCH - START_EPOCH))
+}
+
+# wait at maximum 120 seconds
+while [[ ($(eclipsed) -lt 120) && ("$(curl -s -o /dev/null -w '%{response_code}' "$URL")" != "200") ]]; do
+  sleep 2
+done