Merge pull request #33 from medizininformatik-initiative/dev/IGv2024

Updated gh action and qc rules
medizininformatik-initiative · Nov 13, 2023 · 4c765c3 · 4c765c3
2 parents f131cae + 29f1a07
commit 4c765c3
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Showing 2 changed files with 23 additions and 7 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -25,7 +25,7 @@ jobs:
     steps:
 
       - name: Checkout code
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
 
       # Java and .NET are already installed on ubuntu-latest
 
@@ -37,11 +37,10 @@ jobs:
           PATH_TO_QUALITY_CONTROL_RULES: qc/custom
           DOTNET_VALIDATION_ENABLED: true
           JAVA_VALIDATION_ENABLED: true
+          #The Coding provided (http://fhir.de/CodeSystem/bfarm/ops#5-470) is not in the value set 'OpsVS' (http://fhir.de/ValueSet/bfarm/ops|1.4.0), and a code is required from this value set.
+          EXPECTED_FAILS: VALIDATION_CONFORMANCE_DOTNET VALIDATION_CONFORMANCE_JAVA VALIDATION_EXAMPLES_JAVA
           OUTPUT_FORMAT: RAW
-          JAVA_VALIDATION_OPTIONS: -allow-example-urls true
+          JAVA_VALIDATION_OPTIONS: -allow-example-urls true -tx n/a
           SIMPLIFIER_USERNAME: ${{ secrets.SIMPLIFIER_USERNAME }}
           SIMPLIFIER_PASSWORD: ${{ secrets.SIMPLIFIER_PASSWORD }}
           JAVA_VALIDATOR_VERSION: 6.2.3
-
-          #The Coding provided (http://fhir.de/CodeSystem/bfarm/ops#5-470) is not in the value set 'OpsVS' (http://fhir.de/ValueSet/bfarm/ops|1.4.0), and a code is required from this value set.
-          EXPECTED_FAILS: VALIDATION_EXAMPLES_JAVA
diff --git a/qc/custom.rules.yaml b/qc/custom.rules.yaml
@@ -1,5 +1,22 @@
-- include: recommended
-  name: include-recommended
+# This is the minimal rule series
+# removed 'action: unique' due to multiple versions of OPS CodeSystem
+
+- action: parse
+  name: parse-fhir-resources
+  status: "Checking if all FHIR Resource files can be parsed"
+  files:
+    - /**/*.xml
+    - /**/*.json
+    - "!package.json"
+    - "!fhirpkg.lock.json"
+
+- name: resource-validation
+  status: "Validating resources against the FHIR standard and their profiles"
+  action: validate
+  category: Resource
+  suppress:
+    - 6005
+    - eld-16
 
 - name: version-filled
   filter: (StructureDefinition or ValueSet or CodeSystem or ConceptMap or StructureMap or NamingSystem or SearchParameter or CapabilityStatement or OperationDefinition or ImplementationGuide).exists()