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Many bug fixes (tested on dozens of samples)

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@ozagordi ozagordi released this 06 Feb 15:39
· 52 commits to master since this release
  • Date added on every page of the report, major mutations are in bold.
  • Bugfix: minvar now works evene when neither HCV nor HIV reads are present.
  • Bugfix: find_subtype failed when reads from both HIV and HCV were present.
  • Bugfix: when no RAS mutation is found, reportdrm failed.
  • Bugfix: when the frequency of a mutation is 0.5/0.5, cns_max_freq was longer than the reference.
  • Problems with an assert when all reads have indels: removed the assert, phase_mutations has limitations.