Update from upstream repo bioconda/bioconda-recipes #1
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Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
* Update snakemake-interface-executor-plugins to 9.3.0 * Update snakemake-interface-executor-plugins to 9.3.1 * bump deps --------- Co-authored-by: mencian <[email protected]>
* mashmap: add aarch64/arm64 builds Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> * mashmap: Apply https://conda-forge.org/docs/maintainer/knowledge_base/#newer-c-features-with-old-sdk for OSX Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> * Do not build osx-arm64. --------- Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
* add get_mnv * add get_mnv * Fix typo, add categories * Add run_exports to get_mnv recipe * fix run_exports to get_mnv recipe * fix dependencies * fix dependencies * fix open error * try connect * Update license Co-authored-by: Martin Grigorov <[email protected]> * libraries to host and add license_fam * add rabit sugg pins in run, license and ver --------- Co-authored-by: Martin Grigorov <[email protected]>
* release in bioconda * add gsmap * fix run_exports * add gsmap * add gsmap * Update meta.yaml remove pytorch and pyg to reduce the momory usage
* Create orthofinder 3.0.1 beta release * Re-add run_exports --------- Co-authored-by: Martin Grigorov <[email protected]>
* Update galaxy_sequence_utils to 1.2.0 * Update python requirement, drop six requirement Use pip instead of removed setup.py --------- Co-authored-by: Nicola Soranzo <[email protected]>
* bump version 0.4.1 * regenerate meta.yaml with grayskull
* added arm and arch64 builds * simplifying CMake command * patch for S_ZEROFILL issue with asmlib on osx * moved patch to sources section * another patch to avoid asmlib on osx * typo fixed * forgotten modification in patch
* add pydantic dependency * bump pyliftover dependency
* Update HATCHeT to 2.1.0 * bumped build number to retrigger CI * reset build number to 0 * space separating numpy and version constraint
* add cloudspades * Rename recipes/spades/cloudspades/meta.yaml to recipes/cloudspades/meta.yaml * rm flags, better versioning, rm arm * rm aarch * fix build * add ignore exports, link to the license file directly * fix constraint * fix license path * simplify tests b/c cloudspades acts different * skip osk. make life easier * add proper test * add gz * try building with less threads * fix tests * edit test command * do not build on aarch64/arm64 * add case for Darwin * edit case * Add "-D_LIBCPP_DISABLE_AVAILABILITY" for OSX * skip osx x86_64 for now --------- Co-authored-by: mencian <[email protected]> Co-authored-by: Joshua Zhuang <[email protected]> Co-authored-by: Martin Grigorov <[email protected]>
* updated recipe * added setuptools
* updated recipe * added setuptools * updated recipe
* cloudspades: add linux-aarch64 build Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> * Pass '-fsigned-char' to CXXFLAGS for ARM64 support Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> * Try with large VM for Linux ARM64 Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> --------- Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
* vcf-validator: add linux-aarch64 build Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> * vcf-validator: Use -fsigned-char for ARM64 Signed-off-by: Martin Tzvetanov Grigorov <[email protected]> --------- Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
* Update UMICollapse to 1.1.0 Also changes the source GitHub repo to another fork. Some discussion on this in nf-core/rnaseq#1087 (comment) * Reset build number * Add run_exports
* Update ms2deepscore to 2.2.0 * add setuptools to host --------- Co-authored-by: mencian <[email protected]>
* Update biocode to 0.12.0 * add setuptools to host --------- Co-authored-by: mencian <[email protected]>
* adding the conda recipes for inmoose, a batch correction tool along with differential expression analysis
* solving linting issues
* applying Martin suggestions
* solving linting erros
* removing unnecessary lines
* solving linting errors
* use matplotlib-base
* Add numpy to host deps
* removing line space
* adding the tool name
* clean up recipe
* add c compiler
* remove noarch: python
* add {{ compiler('cxx') }}
* edit tests
---------
Co-authored-by: Martin Grigorov <[email protected]>
Co-authored-by: mencian <[email protected]>
Co-authored-by: Joshua Zhuang <[email protected]>
* Update bactopia-py to 1.3.0 * Update meta.yaml --------- Co-authored-by: Robert A. Petit III <[email protected]>
Co-authored-by: Jianshu Zhao <[email protected]>
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Hello! The remote
bioconda/bioconda-recipeshas some new changes that aren't in this fork.So, here they are, ready to be merged! 🎉
If this pull request can be merged without conflict, you can publish your software
with these new changes.
If you have merge conflicts, this is a great place to fix them.
Have fun!
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