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docs: Fixed grammar mitakes, added more info, and added links
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caniko committed Jul 18, 2024
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5 changes: 5 additions & 0 deletions .vscode/settings.json
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{
"languageToolLinter.languageTool.ignoredWordsInWorkspace": [
"syndb"
]
}
8 changes: 3 additions & 5 deletions docs/dataset/2-upload.md
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{% assign overview_link = "[overview article](0-overview.md)" %}

# Upload

!!! note "Prerequisites"
This article requires that you understand how data is stored on SynDB, we recommend reading through the {{ overview_link }}.
This article requires that you understand how data is stored on SynDB, we recommend reading through the [overview article](0-overview.md) if you are uncertain.

Uploading to SynDB is multistep process, and requires understanding of the SynDB dataset model.
Uploading to SynDB is a multistep process, and requires understanding of the SynDB dataset model.

## The process

Expand Down Expand Up @@ -48,7 +46,7 @@ The GUI will automatically assign UUIDs to each SynDB table unit. The relations
TODO

#### 2. Selecting or creating the SynDB dataset metadata
As mentioned, in the {{ overview_link }}, every dataset has a metadata defined by the data owner during the upload. You can either select an existing dataset or create a new one.
As mentioned, in the "[overview article](0-overview.md)", every dataset has a metadata defined by the data owner during the upload. You can either select an existing dataset or create a new one.

#### 3. Confirm and upload
Before the upload starts you will be prompted to confirm the dataset and the data you are uploading. Once you confirm, the upload will start. Should be relatively quick.
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8 changes: 5 additions & 3 deletions docs/get_started/0-home.md
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# Welcome to SynDB

SynDB is the platform finding and sharing synapse metrics derived from high resolution microscopy essays.
SynDB is the platform for finding, and sharing synapse metrics derived from high resolution microscopy assays.

Head over to the [installation guide](2-install.md) to get started; [upload guide](../dataset/2-upload.md) to share your data; [search guide](../dataset/1-search.md) to find data; [API documentation](https://api.syndb.org/docs) for advanced users.

:simple-youtube:
## :simple-youtube:{ .youtube } Tutorials on YouTube
Explore the tutorials on how to use SynDB on our [YouTube playlist]({{ youtube.playlist }}).

:simple-discord:
## :simple-discord:{ .discord } Raise issues and discussions on Discord
Participate in the community on our [Discord server]({{ discord.url }}).
6 changes: 6 additions & 0 deletions docs/get_started/2-install.md
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Expand Up @@ -14,6 +14,12 @@ pipx install syndb-cli[gui]
pipx install syndb-cli
```

### Upgrade
To upgrade the SynDB CLI along with the GUI (if installed), run the following command:
```bash
pipx upgrade syndb-cli
```

## Advanced
SynDB provides access to its REST API for advanced users to access the data directly. The API can be accessed through the [OpenAPI documentation]({{ api.url }}). For a more tailored approach, you may interact with the API through the `syndb-data` Python package:

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7 changes: 7 additions & 0 deletions docs/stylesheets/extra.css
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.youtube {
color: #EE0F0F;
}

.discord {
color: #7289DA;
}
3 changes: 3 additions & 0 deletions includes/macros.yaml
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discord:
url: https://discord.gg/tmF5WTbFVY
hyperlink: '[Discord](https://discord.gg/tmF5WTbFVY "Invite link to the SynDB Discord server")'

youtube:
playlist: https://www.youtube.com/playlist?list=PL48RF5OdF7Z7sBWDLRO2gd1YCt8QhGDJy
2 changes: 1 addition & 1 deletion mkdocs.yaml
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name: Switch to light mode

extra_css:
- assets/custom.css
- stylesheets/extra.css

watch:
- includes
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