Revert "sra_download -> sra-download -- match the docs"

This reverts commit 415c9bd.
merenlab · Dec 10, 2023 · 59bff38 · 59bff38
1 parent ceb08b0
commit 59bff38
Show file tree

Hide file tree

Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/anvio/workflows/__init__.py b/anvio/workflows/__init__.py
@@ -784,7 +784,7 @@ def get_workflow_module_dict():
                       'phylogenomics': PhylogenomicsWorkflow,
                       'trnaseq': TRNASeqWorkflow,
                       'ecophylo': EcoPhyloWorkflow,
-                      'sra-download': SRADownloadWorkflow}
+                      'sra_download': SRADownloadWorkflow}
 
     return workflows_dict
 

diff --git a/anvio/workflows/sra_download/__init__.py b/anvio/workflows/sra_download/__init__.py
@@ -27,12 +27,12 @@
 
 class SRADownloadWorkflow(WorkflowSuperClass):
     def __init__(self, args=None, run=terminal.Run(), progress=terminal.Progress()):
-        self.init_workflow_super_class(args, workflow_name='sra-download')
+        self.init_workflow_super_class(args, workflow_name='sra_download')
 
         # check that NCBI SRA Toolkit is installed
         if not utils.is_program_exists("prefetch", dont_raise=True) or not utils.is_program_exists("fasterq-dump", dont_raise=True):
             raise ConfigError("'prefetch' and 'fasterq-dump' from the NCBI SRA toolkit must be installed for the "
-                              "sra-download workflow to work. Please check out the installation instructions here: "
+                              "sra_download workflow to work. Please check out the installation instructions here: "
                               "https://github.com/ncbi/sra-tools/wiki/01.-Downloading-SRA-Toolkit")
 
         # Snakemake rules