closes #3902 working on #3897

added synonyms and new terms
mgijax · Feb 2, 2024 · d814566 · d814566
1 parent 7b76ca2
commit d814566
Showing 1 changed file with 50 additions and 2 deletions.
diff --git a/src/ontology/mp-edit.owl b/src/ontology/mp-edit.owl
@@ -11658,6 +11658,10 @@ Declaration(Class(<http://purl.obolibrary.org/obo/MP_0014351>))
 Declaration(Class(<http://purl.obolibrary.org/obo/MP_0014352>))
 Declaration(Class(<http://purl.obolibrary.org/obo/MP_0014353>))
 Declaration(Class(<http://purl.obolibrary.org/obo/MP_0014354>))
+Declaration(Class(<http://purl.obolibrary.org/obo/MP_0014355>))
+Declaration(Class(<http://purl.obolibrary.org/obo/MP_0014356>))
+Declaration(Class(<http://purl.obolibrary.org/obo/MP_0014357>))
+Declaration(Class(<http://purl.obolibrary.org/obo/MP_0014358>))
 Declaration(Class(<http://purl.obolibrary.org/obo/MP_0020000>))
 Declaration(Class(<http://purl.obolibrary.org/obo/MP_0020001>))
 Declaration(Class(<http://purl.obolibrary.org/obo/MP_0020002>))
@@ -25872,6 +25876,8 @@ SubClassOf(<http://purl.obolibrary.org/obo/MP_0001191> <http://purl.obolibrary.o
 # Class: <http://purl.obolibrary.org/obo/MP_0001192> (scaly skin)
 
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:8941642") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MP_0001192> "loss of the outer layer of the epidermis in thick, dry scale-like patches")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0001192> "skin scales")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0001192> "skin scaling")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/MP_0001192> "MPheno.ontology")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0001192> "MP:0001192")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/MP_0001192> <http://purl.obolibrary.org/obo/mp-edit#Europhenome_Terms>)
@@ -26047,6 +26053,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/MP_0001211> <http://purl.obolibrary.o
 # Class: <http://purl.obolibrary.org/obo/MP_0001212> (skin lesions)
 
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "MGI:csmith") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MP_0001212> "focal pathological and/or inflammatory changes characterized by alteration in the size, shape and organization of the cellular components of the skin")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0001212> "cutaneous lesions")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/MP_0001212> "MPheno.ontology")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0001212> "MP:0001212")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0001212> "skin lesions")
@@ -29539,7 +29546,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespac
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0001648> "MP:0001648")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0001648> "abnormal apoptosis")
 EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0001648> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000001> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002314> <http://purl.obolibrary.org/obo/GO_0006915>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
-SubClassOf(<http://purl.obolibrary.org/obo/MP_0001648> <http://purl.obolibrary.org/obo/MP_0000313>)
+SubClassOf(<http://purl.obolibrary.org/obo/MP_0001648> <http://purl.obolibrary.org/obo/MP_0014355>)
 
 # Class: <http://purl.obolibrary.org/obo/MP_0001649> (abnormal mandibular symphysis morphology)
 
@@ -78362,8 +78369,8 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespac
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0008297> "MP:0008297")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0008297> "retention of the adrenal gland x-zone")
 EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0008297> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000462> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0012501> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000066> <http://purl.obolibrary.org/obo/UBERON_0009024>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
-SubClassOf(<http://purl.obolibrary.org/obo/MP_0008297> <http://purl.obolibrary.org/obo/MP_0000313>)
 SubClassOf(<http://purl.obolibrary.org/obo/MP_0008297> <http://purl.obolibrary.org/obo/MP_0008296>)
+SubClassOf(<http://purl.obolibrary.org/obo/MP_0008297> <http://purl.obolibrary.org/obo/MP_0014355>)
 
 # Class: <http://purl.obolibrary.org/obo/MP_0008298> (adrenergic chromaffin cell hyperplasia)
 
@@ -152168,6 +152175,47 @@ EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0014354> ObjectSomeValuesFr
 SubClassOf(<http://purl.obolibrary.org/obo/MP_0014354> <http://purl.obolibrary.org/obo/MP_0002132>)
 SubClassOf(<http://purl.obolibrary.org/obo/MP_0014354> <http://purl.obolibrary.org/obo/MP_0014352>)
 
+# Class: <http://purl.obolibrary.org/obo/MP_0014355> (abnormal programmed cell death)
+
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/GO_0012501>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MP_0014355> "any anomaly in a process which begins when a cell receives an internal or external signal and activates a series of biochemical eventsthat ends with the death of the cell")
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/MP_0014355> "2024-02-02T21:20:46Z"^^xsd:dateTime)
+AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/MP_0014355> <https://orcid.org/0000-0003-4606-0597>)
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0014355> "abnormal PCD")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0014355> "abnormal regulated cell death")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0014355> "MP:0014355")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0014355> "abnormal programmed cell death")
+EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0014355> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000001> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002314> <http://purl.obolibrary.org/obo/GO_0012501>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
+SubClassOf(<http://purl.obolibrary.org/obo/MP_0014355> <http://purl.obolibrary.org/obo/MP_0000313>)
+
+# Class: <http://purl.obolibrary.org/obo/MP_0014356> (abnormal necroptotic process)
+
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "GO:0070266") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MP_0014356> "any anomaly in the process which begins when a cell receives a signal and proceeds through a series of biochemical events, characterized by activation of receptor-interacting serine/threonine-protein kinase 1 and/or 3 (RIPK1/3, also called RIP1/3) and by critical dependence on mixed lineage kinase domain-like (MLKL), and which typically lead to common morphological features of necrotic cell death")
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/MP_0014356> "2024-02-02T21:36:56Z"^^xsd:dateTime)
+AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/MP_0014356> <https://orcid.org/0000-0003-4606-0597>)
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0014356> "abnormal necroptosis")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0014356> "MP:0014356")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0014356> "abnormal necroptotic process")
+SubClassOf(<http://purl.obolibrary.org/obo/MP_0014356> <http://purl.obolibrary.org/obo/MP_0014355>)
+
+# Class: <http://purl.obolibrary.org/obo/MP_0014357> (abnormal pyroptosis)
+
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "GO:0070269") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MP_0014357> "any anomaly in the caspase-1-dependent cell death subroutine that is associated with the generation of pyrogenic mediators such as IL-1beta and IL-18")
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/MP_0014357> "2024-02-02T21:47:27Z"^^xsd:dateTime)
+AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/MP_0014357> <https://orcid.org/0000-0003-4606-0597>)
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0014357> "MP:0014357")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0014357> "abnormal pyroptosis")
+SubClassOf(<http://purl.obolibrary.org/obo/MP_0014357> <http://purl.obolibrary.org/obo/MP_0014355>)
+
+# Class: <http://purl.obolibrary.org/obo/MP_0014358> (abnormal ferroptosis)
+
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "GO:0097707") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MP_0014358> "any anomaly in the process characterized morphologically by the presence of smaller than normal mitochondria with condensed mitochondrial membrane densities, reduction or vanishing of mitochondria crista, and outer mitochondrial membrane rupture")
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/MP_0014358> "2024-02-02T21:50:02Z"^^xsd:dateTime)
+AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/MP_0014358> <https://orcid.org/0000-0003-4606-0597>)
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0014358> "abnormal iron-dependent programmed cell death")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0014358> "MP:0014358")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0014358> "abnormal ferroptosis")
+SubClassOf(<http://purl.obolibrary.org/obo/MP_0014358> <http://purl.obolibrary.org/obo/MP_0014355>)
+
 # Class: <http://purl.obolibrary.org/obo/MP_0020000> (abnormal response to antigen)
 
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://orcid.org/0000-0001-5208-3432>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MP_0020000> "anomaly in the immune response after exposure to an antigen")