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microbiome · Nov 23, 2024 · 6d10f8e · 6d10f8e
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diff --git a/docs/hintikkaxo_presentation_files/figure-revealjs/unnamed-chunk-13-1.png b/docs/hintikkaxo_presentation_files/figure-revealjs/unnamed-chunk-13-1.png
diff --git a/docs/oma.html b/docs/oma.html
@@ -533,15 +533,10 @@ <h2>MIcrobiome Analysis (mia)</h2>
 </ul>
 
 <img data-src="images/mia_logo.png" class="quarto-figure quarto-figure-right r-stretch" style="width:10.0%" alt="mia logo."></section>
-<section id="expanding-ecosystem" class="slide level2">
-<h2>Expanding ecosystem</h2>
+<section id="community-driven-ecosystem-of-tools" class="slide level2">
+<h2>Community-driven ecosystem of tools</h2>
 <div class="columns">
 <div class="column" style="width:70%;">
-<!--
-- Community-driven ecosystem of tools
-- Analysis, visualization, simulation, multi-omics, time series, ...
-- Now with a graphical user interface
--->
 <ul>
 <li><a href="https://bioconductor.org/packages/release/bioc/html/mia.html">mia</a> (Data analysis)</li>
 <li><a href="https://bioconductor.org/packages/release/bioc/html/miaViz.html">miaViz</a> (Visualization)</li>

diff --git a/docs/oma_files/figure-revealjs/data_and_data_container-1.png b/docs/oma_files/figure-revealjs/data_and_data_container-1.png
diff --git a/docs/oma_files/figure-revealjs/pages_and_book-1.png b/docs/oma_files/figure-revealjs/pages_and_book-1.png
diff --git a/docs/oma_files/figure-revealjs/se_field-1.png b/docs/oma_files/figure-revealjs/se_field-1.png
diff --git a/docs/oma_files/figure-revealjs/show_prevalence-1.png b/docs/oma_files/figure-revealjs/show_prevalence-1.png
diff --git a/docs/pcoa_files/figure-revealjs/pca-load-1.png b/docs/pcoa_files/figure-revealjs/pca-load-1.png
diff --git a/docs/search.json b/docs/search.json
@@ -133,11 +133,11 @@
     "text": "MIcrobiome Analysis (mia)\n\nMicrobiome data science in SummarizedExperiment ecosystem\nDistributed through several R packages\nmia package top 7.6% Bioconductor downloads"
   },
   {
-    "objectID": "oma.html#expanding-ecosystem",
-    "href": "oma.html#expanding-ecosystem",
+    "objectID": "oma.html#community-driven-ecosystem-of-tools",
+    "href": "oma.html#community-driven-ecosystem-of-tools",
     "title": "Orchestrating Microbiome Analysis with Bioconductor",
-    "section": "Expanding ecosystem",
-    "text": "Expanding ecosystem\n\n\n\n\nmia (Data analysis)\nmiaViz (Visualization)\nmiaSim (Simulation)\nmiaTime (Time series analysis)\nmiaDash (Graphical user interface)\niSEEtree (Interactive visualization)\nExpanded by independent developers"
+    "section": "Community-driven ecosystem of tools",
+    "text": "Community-driven ecosystem of tools\n\n\n\nmia (Data analysis)\nmiaViz (Visualization)\nmiaSim (Simulation)\nmiaTime (Time series analysis)\nmiaDash (Graphical user interface)\niSEEtree (Interactive visualization)\nExpanded by independent developers"
   },
   {
     "objectID": "oma.html#advantages",

diff --git a/quarto/oma.qmd b/quarto/oma.qmd
@@ -337,17 +337,11 @@ perc <- paste0(round(which(rownames(df) == "mia") / nrow(df), 3)*100, "%")
 
 ![](images/mia_logo.png){fig-alt="mia logo." fig-align="right" width=10%}
 
-## Expanding ecosystem
+## Community-driven ecosystem of tools
 
 ::: columns
 ::: {.column width="70%"}
 
-<!--
-- Community-driven ecosystem of tools
-- Analysis, visualization, simulation, multi-omics, time series, ...
-- Now with a graphical user interface
--->
-
 - [mia](https://bioconductor.org/packages/release/bioc/html/mia.html) (Data analysis)
 - [miaViz](https://bioconductor.org/packages/release/bioc/html/miaViz.html) (Visualization)
 - [miaSim](https://bioconductor.org/packages/release/bioc/html/miaSim.html) (Simulation)