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@microbiomedata

National Microbiome Data Collaborative

National Microbiome Data Collaborative

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  1. nmdc-schema nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 27 8

  2. NMDC_documentation NMDC_documentation Public

    Document workflows, schemas, and portal

    2 3

Repositories

Showing 10 of 79 repositories
  • metaT Public

    Metatranscriptomics workflow

    microbiomedata/metaT’s past year of commit activity
    WDL 4 2 6 1 Updated Nov 19, 2024
  • metaT_Assembly Public

    workflow for metatranscriptome assembly

    microbiomedata/metaT_Assembly’s past year of commit activity
    WDL 0 0 1 1 Updated Nov 19, 2024
  • metaT_ReadsQC Public

    Workflow for metatranscriptome quality control

    microbiomedata/metaT_ReadsQC’s past year of commit activity
    WDL 0 0 0 1 Updated Nov 19, 2024
  • metaT_ReadCounts Public
    microbiomedata/metaT_ReadCounts’s past year of commit activity
    WDL 0 0 0 1 Updated Nov 19, 2024
  • docs Public

    User-facing, web-based documentation about the NMDC

    microbiomedata/docs’s past year of commit activity
    HTML 0 0 24 0 Updated Nov 19, 2024
  • external-metadata-awareness Public

    Tools for fetching and processing external schemas, ontologies and metadata records. Includes value set maintenance and some GitHub org exploration.

    microbiomedata/external-metadata-awareness’s past year of commit activity
    Python 0 0 12 3 Updated Nov 18, 2024
  • nmdc_automation Public

    Prototype automation

    microbiomedata/nmdc_automation’s past year of commit activity
    Python 2 2 31 1 Updated Nov 18, 2024
  • metaAssembly Public

    Workflow for metagenome assembly

    microbiomedata/metaAssembly’s past year of commit activity
    WDL 4 4 1 1 Updated Nov 18, 2024
  • metadata-for-user-facility-template-transformations Public

    CLI tool to convert metadata submissions from the NMDC submission portal to user facility Excel templates

    microbiomedata/metadata-for-user-facility-template-transformations’s past year of commit activity
    Python 0 0 17 0 Updated Nov 18, 2024
  • ReadsQC Public
    microbiomedata/ReadsQC’s past year of commit activity
    WDL 3 6 2 1 Updated Nov 18, 2024
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