adjust CI to quarto

.github/workflows/build-website.yml

@@ -18,53 +18,73 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
+      # - name: Change directory
+      #   run: cd mlr-org
 
       - uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
-          r-version: 4.1.3
+          # pak-version: devel
 
-      - uses: r-lib/actions/setup-pandoc@v2
+      # - uses: r-lib/actions/setup-pandoc@v2
+      - uses: quarto-dev/quarto-actions/setup@v2
 
-      - uses: r-lib/actions/setup-r-dependencies@v2
+      # set date/week for use in cache creation
+      # https://github.community/t5/GitHub-Actions/How-to-set-and-access-a-Workflow-variable/m-p/42970
+      # - cache R packages daily
+      - name: "[Cache] Prepare daily timestamp for cache"
+        if: runner.os != 'Windows'
+        id: date
+        run: echo "::set-output name=date::$(date '+%d-%m')"
+
+      - name: "[Cache] Cache R packages"
+        if: runner.os != 'Windows'
+        uses: pat-s/always-upload-cache@v3
         with:
-        #   pak-version: devel
-          extra-packages: |
-            any::devtools
+          path: ${{ env.R_LIBS_USER }}
+          key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}}
+          restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}}
 
-      - name: Install Remotes
+      - name: Install system dependencies
+        if: runner.os == 'Linux'
         run: |
-          devtools::install_github("mlr-org/mlr3book")
-          devtools::install_github("mlr-org/mlr3extralearners")
-          devtools::install_github("mlr-org/mlr3proba")
-          devtools::install_github("mlr-org/mlr3mbo")
-          devtools::install_github("mlr-org/mlr3spatiotempcv")
-          devtools::install_github("openml/openml-r")
-        shell: Rscript {0}
-
-      - name: Install Packages
-        run: devtools::install()
-        shell: Rscript {0}
+          while read -r cmd
+          do
+            eval sudo $cmd
+          done < <(Rscript -e 'install.packages("remotes", repos = "cloud.r-project.org"); cat(remotes::system_requirements("ubuntu", "20.04"), sep = "\n")')
 
-      - name: Build Website
-        run: rmarkdown::render_site(input = "mlr-org", encoding = "UTF-8")
-        shell: Rscript {0}
+      - uses: pat-s/actions/setup-renv@renv-subdir
+        env:
+          RENV_CONFIG_REPOS_OVERRIDE: ${{ env.RSPM }}
+        with:
+          working-directory: mlr-org
+          cache-version: 1
 
-      # bug in render_site deletes rss feed
-      # rss feed with last post can be restored by rendering the post again
-      # https://github.com/rstudio/distill/issues/381
-      - name: Restore RSS Feed
+      - name: debug
+        env:
+          QUARTO_PUB_AUTH_TOKEN: ${{ inputs.QUARTO_PUB_AUTH_TOKEN }}
+          RENV_CONFIG_REPOS_OVERRIDE: ${{ env.RSPM }}
         run: |
-          files = list.files("mlr-org/_posts", ".Rmd", full.names = TRUE, recursive = TRUE)
-          rmarkdown::render(files[length(files)], encoding = "UTF-8")
-        shell: Rscript {0}
+          cd mlr-org
+          R -q -e 'install.packages("renv", repos = "cloud.r-project.org"); renv::restore()'
+          ls /home/runner/work/mlr3website/mlr3website/mlr-org/renv/library/R-4.2/x86_64-pc-linux-gnu
+          git config --global user.email "${{ inputs.GITHUB_EMAIL }}"
+          git config --global user.name "${{ inputs.GITHUB_USERNAME }}"
+          quarto publish gh-pages
 
-      - name: Deploy
-        if: ${{ github.event_name == 'push' }}
-        uses: JamesIves/[email protected]
-        with:
-          branch: gh-pages
-          folder: mlr-org/docs
-          single-commit: false
+      # - name: Install Packages
+      #   run: devtools::install()
+      #   shell: Rscript {0}
+
+      # - name: Render Quarto Project
+      #   uses: quarto-dev/quarto-actions/render@v2
+      # with:
+      #   path: mlr-org
+
+      # - name: Publish to GitHub Pages (and render)
+      #   uses: quarto-dev/quarto-actions/publish@v2
+      #   with:
+      #     path: mlr-org
+      #     target: gh-pages

.github/workflows/render-gallery.yml

@@ -1,82 +1,82 @@
-on:
-  workflow_dispatch:
-  push:
-    branches:
-      - main
-    paths:
-      - 'mlr-org/_gallery/**'
-  pull_request:
-    branches:
-      - main
-    paths:
-      - 'mlr-org/_gallery/**'
-  schedule:
-    - cron: "0 6 * * *"
+# on:
+#   workflow_dispatch:
+#   push:
+#     branches:
+#       - main
+#     paths:
+#       - 'mlr-org/_gallery/**'
+#   pull_request:
+#     branches:
+#       - main
+#     paths:
+#       - 'mlr-org/_gallery/**'
+#   schedule:
+#     - cron: "0 6 * * *"
 
-name: render-gallery
+# name: render-gallery
 
-jobs:
-  render-gallery:
-    runs-on: ubuntu-latest
+# jobs:
+#   render-gallery:
+#     runs-on: ubuntu-latest
 
-    env:
-      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+#     env:
+#       R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
+#       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
-    steps:
-      - uses: actions/checkout@v2
+#     steps:
+#       - uses: actions/checkout@v2
 
-      - uses: r-lib/actions/setup-r@v2
-        with:
-          use-public-rspm: true
-          r-version: 4.1.3
+#       - uses: r-lib/actions/setup-r@v2
+#         with:
+#           use-public-rspm: true
+#           r-version: 4.1.3
 
-      - uses: r-lib/actions/setup-pandoc@v2
+#       - uses: r-lib/actions/setup-pandoc@v2
 
-      - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: |
-            any::devtools
+#       - uses: r-lib/actions/setup-r-dependencies@v2
+#         with:
+#           extra-packages: |
+#             any::devtools
 
-      - name: Install Packages
-        run: devtools::install()
-        shell: Rscript {0}
+#       - name: Install Packages
+#         run: devtools::install()
+#         shell: Rscript {0}
 
-      - name: Render Gallery
-        run: |
-          files = list.files("mlr-org/_gallery/", pattern = ".Rmd", full.names = TRUE, recursive = TRUE)
-          mlr3misc::walk(files, function(file) rmarkdown::render(file, encoding = "UTF-8", params = list(eval_all = FALSE)))
-        shell: Rscript {0}
+#       - name: Render Gallery
+#         run: |
+#           files = list.files("mlr-org/_gallery/", pattern = ".Rmd", full.names = TRUE, recursive = TRUE)
+#           mlr3misc::walk(files, function(file) rmarkdown::render(file, encoding = "UTF-8", params = list(eval_all = FALSE)))
+#         shell: Rscript {0}
 
-      - name: Build Website
-        run: rmarkdown::render_site(input = "mlr-org", encoding = "UTF-8")
-        shell: Rscript {0}
+#       - name: Build Website
+#         run: rmarkdown::render_site(input = "mlr-org", encoding = "UTF-8")
+#         shell: Rscript {0}
 
-      # bug in render_site deletes rss feed
-      # rss feed with last post can be restored by rendering the post again
-      # https://github.com/rstudio/distill/issues/381
-      - name: Restore RSS Feed
-        run: |
-          files = list.files("mlr-org/_posts", ".Rmd", full.names = TRUE, recursive = TRUE)
-          rmarkdown::render(files[length(files)], encoding = "UTF-8")
-        shell: Rscript {0}
+#       # bug in render_site deletes rss feed
+#       # rss feed with last post can be restored by rendering the post again
+#       # https://github.com/rstudio/distill/issues/381
+#       - name: Restore RSS Feed
+#         run: |
+#           files = list.files("mlr-org/_posts", ".Rmd", full.names = TRUE, recursive = TRUE)
+#           rmarkdown::render(files[length(files)], encoding = "UTF-8")
+#         shell: Rscript {0}
 
-      - name: Commit Results
-        if: ${{ github.event_name == 'push' }}
-        run: |
-          rm -f .github/pkg.lock
-          git config --local user.name "$GITHUB_ACTOR"
-          git config --local user.email "[email protected]"
-          git config --local pull.rebase false
-          git pull
-          git add -A
-          git commit -m 'refactor: render gallery posts'
-          git push origin
+#       - name: Commit Results
+#         if: ${{ github.event_name == 'push' }}
+#         run: |
+#           rm -f .github/pkg.lock
+#           git config --local user.name "$GITHUB_ACTOR"
+#           git config --local user.email "[email protected]"
+#           git config --local pull.rebase false
+#           git pull
+#           git add -A
+#           git commit -m 'refactor: render gallery posts'
+#           git push origin
 
-      - name: Deploy
-        if: ${{ github.event_name == 'push' }}
-        uses: JamesIves/[email protected]
-        with:
-          branch: gh-pages
-          folder: mlr-org/docs
-          single-commit: false
+#       - name: Deploy
+#         if: ${{ github.event_name == 'push' }}
+#         uses: JamesIves/[email protected]
+#         with:
+#           branch: gh-pages
+#           folder: mlr-org/docs
+#           single-commit: false

.gitignore

@@ -112,7 +112,6 @@ rsconnect/
 
 # Custom rules (everything added below won't be overriden by 'Generate .gitignore File' if you use 'Update' option)
 
-mlr-org/renv/*
 mlr-org/blog.xml
 mlr-org/site_libs
 mlr3website/renv/

mlr-org/gallery/2020-01-30-house-prices-in-king-county/2020-01-30-house-prices-in-king-county.Rmd

@@ -11,7 +11,7 @@ date: 01-30-2020
 description: |
   Use case illustrating data preprocessing and model fitting via mlr3 on the "King County House Prices" dataset.
 params:
-  eval_all: FALSE
+  eval_all: TRUE
 image: thumbnail.png
 knitr:
   opts_chunk:

mlr-org/renv/.gitignore

@@ -0,0 +1,7 @@
+sandbox/
+library/
+local/
+cellar/
+lock/
+python/
+staging/