Fix bug that made channel names disappear when .* was used during loa…

…ding

pom.xml

@@ -9,9 +9,7 @@
 
     <groupId>org.embl.mobie</groupId>
     <artifactId>mobie-viewer-fiji</artifactId>
-    <version>6.0.0-SNAPSHOT</version>
-
-
+    <version>6.0.1</version>
 
     <!-- mvn clean install -Dmaven.test.skip=true -Dscijava.app.directory=/Users/tischer/Desktop/Fiji/Fiji-MoBIE.app -->
     <!-- mvn clean install -Dmaven.test.skip=true -Dscijava.app.directory=/Users/tischer/Desktop/Fiji/Fiji-40.0.0.app -->
@@ -87,10 +85,10 @@
 
         <allowedDuplicateClasses>${scijava.allowedDuplicateClasses},org.relaxng.*,sun.*,com.sun.*,sun.rmi.*,com.sun.jdi.*,sun.jvmstat.*,sun.applet.*,com.sun.xml.*,com.sun.tools.*,sun.tools.*,com.sun.istack.*,shaded.parquet.it.unimi.dsi.fastutil.*,javax.xml.bind.*,com.sun.xml.bind.*,com.sun.xml.txw2.*,com.sun.codemodel.*</allowedDuplicateClasses>
 
-        <mobie-io.version>4.0.0-SNAPSHOT</mobie-io.version>
-        <bigdataviewer-playground.version>0.10.7</bigdataviewer-playground.version>
-        <bvv-playground.version>0.3.3</bvv-playground.version>
-        <mobie-io.version>3.0.4</mobie-io.version>
+        <mobie-io.version>4.0.1</mobie-io.version>
+        <bigdataviewer-playground.version>0.11.0</bigdataviewer-playground.version>
+        <bvv-playground.version>0.3.4</bvv-playground.version>
+
         <annotations.version>16.0.2</annotations.version>
         <trove.version>1.0.2</trove.version>
         <TurboReg_.version>2.0.0</TurboReg_.version>

src/main/java/org/embl/mobie/lib/data/CollectionTableDataSetter.java

@@ -569,6 +569,7 @@ private static List< Transformation > getAffineTransformationAsList( List< Strin
         }
         catch ( Exception e )
         {
+            int a = 1;
             // Do not add a transformation
         }
 

src/main/java/org/embl/mobie/lib/util/MoBIEHelper.java

@@ -154,8 +154,9 @@ public static String removeExtension( String uri )
 	{
 		uri = FilenameUtils.removeExtension( uri );
 
-		// some have two extensions, e.g. .ome.zarr
-		uri = FilenameUtils.removeExtension( uri );
+		// The above will only remove the ".zarr"
+		if ( uri.endsWith( ".ome" ) )
+			uri = uri.replace( ".ome", "" );
 
 		return uri;
 	}