Skip to content

Commit

Permalink
Update docs site
Browse files Browse the repository at this point in the history
  • Loading branch information
github-actions committed Jan 20, 2024
1 parent c4ed0a8 commit 48b8ec5
Show file tree
Hide file tree
Showing 20 changed files with 289 additions and 289 deletions.
30 changes: 15 additions & 15 deletions docs/404.html
Original file line number Diff line number Diff line change
Expand Up @@ -8,16 +8,15 @@
<title>InteinFinder</title>
<link rel="stylesheet" href="/InteinFinder/css/theme.css" />
<link rel="stylesheet" href="/InteinFinder/css/theme_extra.css" />
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/styles/github.min.css" />
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/styles/github.min.css" />

<script src="/InteinFinder/js/jquery-3.6.0.min.js" defer></script>
<!--[if lt IE 9]>
<script src="/InteinFinder/js/html5shiv.min.js"></script>
<![endif]-->
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/highlight.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/languages/bash.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/languages/toml.min.js"></script>
<script>hljs.initHighlightingOnLoad();</script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/highlight.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/languages/bash.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/languages/toml.min.js"></script>
<script>hljs.highlightAll();</script>
</head>

<body class="wy-body-for-nav" role="document">
Expand All @@ -29,7 +28,7 @@
<a href="/InteinFinder/." class="icon icon-home"> InteinFinder
</a><div role="search">
<form id ="rtd-search-form" class="wy-form" action="/InteinFinder//search.html" method="get">
<input type="text" name="q" placeholder="Search docs" title="Type search term here" />
<input type="text" name="q" placeholder="Search docs" aria-label="Search docs" title="Type search term here" />
</form>
</div>
</div>
Expand Down Expand Up @@ -85,7 +84,7 @@
<div class="wy-nav-content">
<div class="rst-content"><div role="navigation" aria-label="breadcrumbs navigation">
<ul class="wy-breadcrumbs">
<li><a href="/InteinFinder/." class="icon icon-home" alt="Docs"></a> &raquo;</li>
<li><a href="/InteinFinder/." class="icon icon-home" aria-label="Docs"></a></li>
<li class="wy-breadcrumbs-aside">
</li>
</ul>
Expand Down Expand Up @@ -130,14 +129,15 @@ <h1 id="404-page-not-found">404</h1>

</span>
</div>
<script>var base_url = '/InteinFinder/';</script>
<script src="/InteinFinder/js/theme_extra.js" defer></script>
<script src="/InteinFinder/js/theme.js" defer></script>
<script src="/InteinFinder/search/main.js" defer></script>
<script defer>
window.onload = function () {
<script src="/InteinFinder/js/jquery-3.6.0.min.js"></script>
<script>var base_url = "/InteinFinder/";</script>
<script src="/InteinFinder/js/theme_extra.js"></script>
<script src="/InteinFinder/js/theme.js"></script>
<script src="/InteinFinder/search/main.js"></script>
<script>
jQuery(function () {
SphinxRtdTheme.Navigation.enable(true);
};
});
</script>

</body>
Expand Down
34 changes: 17 additions & 17 deletions docs/basic-usage/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@
<title>Basic Usage - InteinFinder</title>
<link rel="stylesheet" href="../css/theme.css" />
<link rel="stylesheet" href="../css/theme_extra.css" />
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/styles/github.min.css" />
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/styles/github.min.css" />

<script>
// Current page data
Expand All @@ -17,14 +17,13 @@
var mkdocs_page_url = "/InteinFinder/basic-usage/";
</script>

<script src="../js/jquery-3.6.0.min.js" defer></script>
<!--[if lt IE 9]>
<script src="../js/html5shiv.min.js"></script>
<![endif]-->
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/highlight.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/languages/bash.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/languages/toml.min.js"></script>
<script>hljs.initHighlightingOnLoad();</script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/highlight.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/languages/bash.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/languages/toml.min.js"></script>
<script>hljs.highlightAll();</script>



Expand Down Expand Up @@ -73,7 +72,7 @@
<a href=".." class="icon icon-home"> InteinFinder
</a><div role="search">
<form id ="rtd-search-form" class="wy-form" action="../search.html" method="get">
<input type="text" name="q" placeholder="Search docs" title="Type search term here" />
<input type="text" name="q" placeholder="Search docs" aria-label="Search docs" title="Type search term here" />
</form>
</div>
</div>
Expand Down Expand Up @@ -157,9 +156,9 @@
<div class="wy-nav-content">
<div class="rst-content"><div role="navigation" aria-label="breadcrumbs navigation">
<ul class="wy-breadcrumbs">
<li><a href=".." class="icon icon-home" alt="Docs"></a> &raquo;</li>
<li>Examples & Tutorials &raquo;</li>
<li>Basic Usage</li>
<li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
<li class="breadcrumb-item">Examples & Tutorials</li>
<li class="breadcrumb-item active">Basic Usage</li>
<li class="wy-breadcrumbs-aside">
<a href="https://github.com/mooreryan/InteinFinder/edit/main/_docs_src/src/basic-usage.md" class="icon icon-github"> Edit on GitHub</a>
</li>
Expand Down Expand Up @@ -396,14 +395,15 @@ <h2 id="wrap-up">Wrap up</h2>

</span>
</div>
<script>var base_url = '..';</script>
<script src="../js/theme_extra.js" defer></script>
<script src="../js/theme.js" defer></script>
<script src="../search/main.js" defer></script>
<script defer>
window.onload = function () {
<script src="../js/jquery-3.6.0.min.js"></script>
<script>var base_url = "..";</script>
<script src="../js/theme_extra.js"></script>
<script src="../js/theme.js"></script>
<script src="../search/main.js"></script>
<script>
jQuery(function () {
SphinxRtdTheme.Navigation.enable(true);
};
});
</script>

</body>
Expand Down
34 changes: 17 additions & 17 deletions docs/cli/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@
<title>Command Line Interface - InteinFinder</title>
<link rel="stylesheet" href="../css/theme.css" />
<link rel="stylesheet" href="../css/theme_extra.css" />
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/styles/github.min.css" />
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/styles/github.min.css" />

<script>
// Current page data
Expand All @@ -17,14 +17,13 @@
var mkdocs_page_url = "/InteinFinder/cli/";
</script>

<script src="../js/jquery-3.6.0.min.js" defer></script>
<!--[if lt IE 9]>
<script src="../js/html5shiv.min.js"></script>
<![endif]-->
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/highlight.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/languages/bash.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/languages/toml.min.js"></script>
<script>hljs.initHighlightingOnLoad();</script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/highlight.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/languages/bash.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/languages/toml.min.js"></script>
<script>hljs.highlightAll();</script>



Expand Down Expand Up @@ -73,7 +72,7 @@
<a href=".." class="icon icon-home"> InteinFinder
</a><div role="search">
<form id ="rtd-search-form" class="wy-form" action="../search.html" method="get">
<input type="text" name="q" placeholder="Search docs" title="Type search term here" />
<input type="text" name="q" placeholder="Search docs" aria-label="Search docs" title="Type search term here" />
</form>
</div>
</div>
Expand Down Expand Up @@ -135,9 +134,9 @@
<div class="wy-nav-content">
<div class="rst-content"><div role="navigation" aria-label="breadcrumbs navigation">
<ul class="wy-breadcrumbs">
<li><a href=".." class="icon icon-home" alt="Docs"></a> &raquo;</li>
<li>Usage &raquo;</li>
<li>Command Line Interface</li>
<li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
<li class="breadcrumb-item">Usage</li>
<li class="breadcrumb-item active">Command Line Interface</li>
<li class="wy-breadcrumbs-aside">
<a href="https://github.com/mooreryan/InteinFinder/edit/main/_docs_src/src/cli.md" class="icon icon-github"> Edit on GitHub</a>
</li>
Expand Down Expand Up @@ -198,14 +197,15 @@ <h2 id="options">Options</h2>

</span>
</div>
<script>var base_url = '..';</script>
<script src="../js/theme_extra.js" defer></script>
<script src="../js/theme.js" defer></script>
<script src="../search/main.js" defer></script>
<script defer>
window.onload = function () {
<script src="../js/jquery-3.6.0.min.js"></script>
<script>var base_url = "..";</script>
<script src="../js/theme_extra.js"></script>
<script src="../js/theme.js"></script>
<script src="../search/main.js"></script>
<script>
jQuery(function () {
SphinxRtdTheme.Navigation.enable(true);
};
});
</script>

</body>
Expand Down
34 changes: 17 additions & 17 deletions docs/config-files/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@
<title>Config files - InteinFinder</title>
<link rel="stylesheet" href="../css/theme.css" />
<link rel="stylesheet" href="../css/theme_extra.css" />
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/styles/github.min.css" />
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/styles/github.min.css" />

<script>
// Current page data
Expand All @@ -17,14 +17,13 @@
var mkdocs_page_url = "/InteinFinder/config-files/";
</script>

<script src="../js/jquery-3.6.0.min.js" defer></script>
<!--[if lt IE 9]>
<script src="../js/html5shiv.min.js"></script>
<![endif]-->
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/highlight.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/languages/bash.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/languages/toml.min.js"></script>
<script>hljs.initHighlightingOnLoad();</script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/highlight.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/languages/bash.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/languages/toml.min.js"></script>
<script>hljs.highlightAll();</script>



Expand Down Expand Up @@ -73,7 +72,7 @@
<a href=".." class="icon icon-home"> InteinFinder
</a><div role="search">
<form id ="rtd-search-form" class="wy-form" action="../search.html" method="get">
<input type="text" name="q" placeholder="Search docs" title="Type search term here" />
<input type="text" name="q" placeholder="Search docs" aria-label="Search docs" title="Type search term here" />
</form>
</div>
</div>
Expand Down Expand Up @@ -169,9 +168,9 @@
<div class="wy-nav-content">
<div class="rst-content"><div role="navigation" aria-label="breadcrumbs navigation">
<ul class="wy-breadcrumbs">
<li><a href=".." class="icon icon-home" alt="Docs"></a> &raquo;</li>
<li>Usage &raquo;</li>
<li>Config files</li>
<li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
<li class="breadcrumb-item">Usage</li>
<li class="breadcrumb-item active">Config files</li>
<li class="wy-breadcrumbs-aside">
<a href="https://github.com/mooreryan/InteinFinder/edit/main/_docs_src/src/config-files.md" class="icon icon-github"> Edit on GitHub</a>
</li>
Expand Down Expand Up @@ -537,14 +536,15 @@ <h3 id="rpsblast">RPSBLAST</h3>

</span>
</div>
<script>var base_url = '..';</script>
<script src="../js/theme_extra.js" defer></script>
<script src="../js/theme.js" defer></script>
<script src="../search/main.js" defer></script>
<script defer>
window.onload = function () {
<script src="../js/jquery-3.6.0.min.js"></script>
<script>var base_url = "..";</script>
<script src="../js/theme_extra.js"></script>
<script src="../js/theme.js"></script>
<script src="../search/main.js"></script>
<script>
jQuery(function () {
SphinxRtdTheme.Navigation.enable(true);
};
});
</script>

</body>
Expand Down
Loading

0 comments on commit 48b8ec5

Please sign in to comment.