add missing citations (#798)

paper/paper.bib

@@ -127,6 +127,28 @@ @article{anderson2010hoomd
   pages = {109363}
 }
 
+# NAMD
+@article{phillips2020scalable,
+  title     = "Scalable molecular dynamics on {CPU} and {GPU} architectures
+               with {NAMD}",
+  author    = "Phillips, James C and Hardy, David J and Maia, Julio D C and
+               Stone, John E and Ribeiro, Jo{\~a}o V and Bernardi, Rafael C and
+               Buch, Ronak and Fiorin, Giacomo and H{\'e}nin, J{\'e}r{\^o}me
+               and Jiang, Wei and McGreevy, Ryan and Melo, Marcelo C R and
+               Radak, Brian K and Skeel, Robert D and Singharoy, Abhishek and
+               Wang, Yi and Roux, Beno{\^\i}t and Aksimentiev, Aleksei and
+               Luthey-Schulten, Zaida and Kal{\'e}, Laxmikant V and Schulten,
+               Klaus and Chipot, Christophe and Tajkhorshid, Emad",
+  journal   = "J. Chem. Phys.",
+  publisher = "AIP Publishing",
+  volume    =  153,
+  number    =  4,
+  pages     = "044130",
+  month     =  jul,
+  year      =  2020,
+  language  = "en"
+}
+
 # Cassandra
 @article{shah2017cassandra,
   title = {Cassandra: An open source Monte Carlo package for molecular simulation},
@@ -332,3 +354,61 @@ @article{thompson2019scalable
   title = {Scalable Screening of Soft Matter: A Case Study of Mixtures of Ionic Liquids and Organic Solvents},
   journal = {J. Phys. Chem. B}
 }
+
+# Example using ParmEd and OpenMM
+@article{kehrein2023unravel,
+  title = {Unravel the Tangle: Atomistic Insight into Ultrahigh Curcumin‐Loaded Polymer Micelles},
+  volume = {19},
+  ISSN = {1613-6829},
+  url = {http://dx.doi.org/10.1002/smll.202303066},
+  DOI = {10.1002/smll.202303066},
+  number = {44},
+  journal = {Small},
+  publisher = {Wiley},
+  author = {Kehrein,  Josef and G\"{u}rs\"{o}z,  Ekinsu and Davies,  Matthew and Luxenhofer,  Robert and Bunker,  Alex},
+  year = {2023},
+  month = jul
+}
+@article{elenareal2023the,
+  title = {The structure of pathogenic huntingtin exon 1 defines the bases of its aggregation propensity},
+  volume = {30},
+  ISSN = {1545-9985},
+  url = {http://dx.doi.org/10.1038/s41594-023-00920-0},
+  DOI = {10.1038/s41594-023-00920-0},
+  number = {3},
+  journal = {Nature Structural & Molecular Biology},
+  publisher = {Springer Science and Business Media LLC},
+  author = {Elena-Real,  Carlos A. and Sagar,  Amin and Urbanek,  Annika and Popovic,  Matija and Morató,  Anna and Estaña,  Alejandro and Fournet,  Aurélie and Doucet,  Christine and Lund,  Xamuel L. and Shi,  Zhen-Dan and Costa,  Luca and Thureau,  Aurélien and Allemand,  Frédéric and Swenson,  Rolf E. and Milhiet,  Pierre-Emmanuel and Crehuet,  Ramon and Barducci,  Alessandro and Cortés,  Juan and Sinnaeve,  Davy and Sibille,  Nathalie and Bernadó,  Pau},
+  year = {2023},
+  month = mar,
+  pages = {309–320}
+}
+
+@article{tesei2021accurate,
+  title = {Accurate model of liquid–liquid phase behavior of intrinsically disordered proteins from optimization of single-chain properties},
+  volume = {118},
+  ISSN = {1091-6490},
+  url = {http://dx.doi.org/10.1073/pnas.2111696118},
+  DOI = {10.1073/pnas.2111696118},
+  number = {44},
+  journal = {Proceedings of the National Academy of Sciences},
+  publisher = {Proceedings of the National Academy of Sciences},
+  author = {Tesei,  Giulio and Schulze,  Thea K. and Crehuet,  Ramon and Lindorff-Larsen,  Kresten},
+  year = {2021},
+  month = oct
+}
+
+@article{marrink2019computational,
+  title = {Computational Modeling of Realistic Cell Membranes},
+  volume = {119},
+  ISSN = {1520-6890},
+  url = {http://dx.doi.org/10.1021/acs.chemrev.8b00460},
+  DOI = {10.1021/acs.chemrev.8b00460},
+  number = {9},
+  journal = {Chemical Reviews},
+  publisher = {American Chemical Society (ACS)},
+  author = {Marrink,  Siewert J. and Corradi,  Valentina and Souza,  Paulo C.T. and Ingólfsson,  Helgi I. and Tieleman,  D. Peter and Sansom,  Mark S.P.},
+  year = {2019},
+  month = jan,
+  pages = {6184–6226}
+}