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Merge pull request #27 from ajmaurais/gene_level_data
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Convert params.pdc.gene_level_data to file object
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mriffle authored Dec 11, 2024
2 parents a1b2e93 + 16f8b27 commit 7d4dc54
Showing 1 changed file with 2 additions and 1 deletion.
3 changes: 2 additions & 1 deletion main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -345,8 +345,9 @@ workflow {

// Export PDC gene tables
if(params.pdc.gene_level_data != null) {
gene_level_data = file(params.pdc.gene_level_data, checkIfExists: true)
EXPORT_GENE_REPORTS(generate_dia_qc_report.out.qc_report_db,
params.pdc.gene_level_data,
gene_level_data,
pdc_study_name)
EXPORT_GENE_REPORTS.out.gene_reports | flatten | set{ gene_reports }
} else {
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