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Fix dynamic metadata file names in ANNOTATION_TSV_TO_CSV #12

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merged 1 commit into from
Aug 7, 2024
Merged

Fix dynamic metadata file names in ANNOTATION_TSV_TO_CSV #12

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6 changes: 3 additions & 3 deletions modules/skyline.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -138,8 +138,8 @@ process ANNOTATION_TSV_TO_CSV {
path replicate_metadata

output:
path("metadata.annotations.csv"), emit: annotation_csv
path("metadata.definitions.bat"), emit: annotation_definitions
path("${replicate_metadata.baseName}.annotations.csv"), emit: annotation_csv
path("${replicate_metadata.baseName}.definitions.bat"), emit: annotation_definitions

shell:
"""
Expand All @@ -148,7 +148,7 @@ process ANNOTATION_TSV_TO_CSV {

stub:
"""
touch metadata.definitions.bat metadata.annotations.csv
touch ${replicate_metadata.baseName}.definitions.bat ${replicate_metadata.baseName}.annotations.csv
"""
}

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