Updating cores for LSF and fixing Biometrics

What's Changed

• Outputfile name change by @karthigayini in #194
• Pv_maf_chipvar by @karthigayini in #195
• Image 0.2.3 by @karthigayini in #196
• bump docker version FOR CCI Utils by @buehlere in #198
• Adding Biometrics 0.2.15 by @rhshah in #197
• Updating to accomodate for singularity on LSF by @rhshah in #200

Full Changelog: 1.3.3...1.3.4

Update fixing cci_utils to handle files with no noise

1.3.3

Update fixing cci_utils to handle files with no noise

Additional Tools for Variant Calling and Nucleo QC

1.3.0

Making release for Nucleo QC generation

Adding Option and a tool

Changes To existing Tools:

• Fastp: Adding option to set maximum lenght of the read

New Tool

• GATK DownSampleSam

Adding changes for tools in quality control workflow.

✔️ MultiQC
✔️ Picard QC Tools
✔️ GATK QC tools

Adding VarDict, Manta and Picard tools

Adding the following:

✔️ Manta 1.5.1
✔️ VarDict
✔️ Picard CollectMultipleMetrics
✔️ Picard MarkDuplicates 2.21.2
✔️Picard AddOrReplaceReadGroups 2.21.2
✔️Picard Fixate Information 2.21.2
✔️Picard CollectAlignmentMetrics 2.21.2
✔️Picard Hsmetrics 2.21.2
✔️ Picard collectmultiplemetrics 2.21.2

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Fixing Picard Tools

Command Line tools for FASTQ to BAM

New tools added:

Mutect 1.1.5