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Use IGO_ID instead of Collab_ID for creating title file / finding fastqs #226

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ionox0 opened this issue Mar 2, 2020 · 0 comments
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ionox0 commented Mar 2, 2020

Reasons why:

  • Collab_ID does not always match fastq file names (fastqs don't get renamed if IDs are updated in LIMS)
  • IGO_ID is more reliable (consistent format that comes from IGO, not external collaborators)

Issues this will cause:

  • We have to put IGO_ID in a field called Collab_ID in title file which is technically wrong
  • Need to have regex that includes "_" before and after IGO_ID to make sure only unique matches are found
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