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38 Open 16 Closed
38 Open 16 Closed
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Issues list

remove --rm-dups argument
#248 opened Aug 20, 2021 by ionox0
Donate CWL tool descriptions to community repo?
#245 opened May 6, 2021 by mr-c
2
Environment issues when building python_tools
#238 opened Aug 19, 2020 by aef-
textplot library missing
#237 opened Jul 20, 2020 by ionox0
TERT promoter mutations not able to be tagged through tag_hotspots
#236 opened Jun 11, 2020 by ionox0
1
vardict not giving variants
#235 opened May 20, 2020 by ionox0
SV module missing file exception
#234 opened Apr 29, 2020 by ionox0
make tag_hotspots compatible with python3
#233 opened Apr 20, 2020 by ionox0
stricter validation for generate_access_variants_inputs
#231 opened Apr 13, 2020 by ionox0
1
title file all female (F) makes FALSE in qc report
#230 opened Apr 6, 2020 by ionox0
TOIL_LSF_ARGS has become a required environment variable
#229 opened Apr 6, 2020 by ionox0
Merging of generate_access_variants_inputs.py script enhancement New feature or request
#228 opened Mar 5, 2020 by rhshah
@ionox0 @andurill
Premature termination failure
#227 opened Mar 4, 2020 by ionox0
Use IGO_ID instead of Collab_ID for creating title file / finding fastqs
#226 opened Mar 2, 2020 by ionox0
CNV inputs generation script should use absolute paths
#225 opened Feb 28, 2020 by ionox0
Remove stdout / stderr redirection from CNV workflow steps
#224 opened Feb 28, 2020 by ionox0
finished job gets logged repeatedly in debug mode
#215 opened Oct 29, 2019 by ionox0
Organize /work/access enhancement New feature or request
#212 opened Oct 23, 2019 by rhshah
4 of 5 tasks
@rhshah @ionox0
1
CondaMultiError: SafetyError
#211 opened Oct 14, 2019 by ionox0
Toil not parsing bjobs -l info for running jobs
#209 opened Jul 30, 2019 by ionox0
No such file or directory: tmpw7lvSp/f499d571-25d4-4352-8d51-3ce3b3fdfce7/.3399
#208 opened Jul 30, 2019 by ionox0
rabix - Cannot read property "java_8" from undefined
#207 opened Jul 29, 2019 by ionox0
.cleanup not found --> ResolveIndirect error
#206 opened Jul 29, 2019 by ionox0
@nikhil @sivkovic @allanbolipata
12
can't use cwl step to create empty_dir anymore invalid This doesn't seem right
#205 opened Jul 26, 2019 by ionox0
1
manifests / title files cannot have #EMPTY or #empty as cell values
#200 opened Jul 23, 2019 by ionox0
ProTip! no:milestone will show everything without a milestone.